Transcript: Human XM_011509623.3

PREDICTED: Homo sapiens CD244 molecule (CD244), transcript variant X4, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CD244 (51744)
Length:
1906
CDS:
216..719

Additional Resources:

NCBI RefSeq record:
XM_011509623.3
NBCI Gene record:
CD244 (51744)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011509623.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000057529 CGTCACAAGAACCTGCATATA pLKO.1 529 CDS 100% 13.200 10.560 N CD244 n/a
2 TRCN0000057528 GCAGCAATTCTCACCTTTCTT pLKO.1 725 3UTR 100% 5.625 3.938 N CD244 n/a
3 TRCN0000057532 CCCTTCCTTCAATAGCACTAT pLKO.1 608 CDS 100% 4.950 3.465 N CD244 n/a
4 TRCN0000057530 CGTGATTCTAAGCGCACTGTT pLKO.1 308 CDS 100% 4.950 3.465 N CD244 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011509623.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03377 pDONR223 100% 44.4% 41.1% None (many diffs) n/a
2 ccsbBroad304_03377 pLX_304 0% 44.4% 41.1% V5 (many diffs) n/a
3 TRCN0000481523 CCCATACCTCCCCAGTGTTGTTCG pLX_317 35.2% 44.4% 41.1% V5 (many diffs) n/a
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