Transcript: Human NM_014568.3

Homo sapiens polypeptide N-acetylgalactosaminyltransferase 5 (GALNT5), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-08-02
Taxon:
Homo sapiens (human)
Gene:
GALNT5 (11227)
Length:
10344
CDS:
379..3201

Additional Resources:

NCBI RefSeq record:
NM_014568.3
NBCI Gene record:
GALNT5 (11227)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_014568.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000036416 CCAGTAATCGAAGTCATCAAT pLKO.1 2221 CDS 100% 5.625 7.875 N GALNT5 n/a
2 TRCN0000435696 ACCTGGTTAAGACTTATTAAA pLKO_005 2917 CDS 100% 15.000 10.500 N GALNT5 n/a
3 TRCN0000423801 ATACAACCAGAGTCATATAAA pLKO_005 1590 CDS 100% 15.000 10.500 N GALNT5 n/a
4 TRCN0000412505 CAATGTCTACCTTAGCGATTT pLKO_005 1770 CDS 100% 10.800 7.560 N GALNT5 n/a
5 TRCN0000036418 CCCTTGTGATAACAGAAACAA pLKO.1 2991 CDS 100% 5.625 3.938 N GALNT5 n/a
6 TRCN0000036417 GCAGAGCAGCTAGTTCACAAT pLKO.1 1837 CDS 100% 4.950 3.465 N GALNT5 n/a
7 TRCN0000036415 GCATAAATCAACATCAGTCTT pLKO.1 3027 CDS 100% 4.950 3.465 N GALNT5 n/a
8 TRCN0000036414 CCTCTCATTCAGTGAGATCAA pLKO.1 480 CDS 100% 0.495 0.347 N GALNT5 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_014568.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11614 pDONR223 100% 51.5% 51.4% None 230C>T;1455_2820delinsG n/a
2 ccsbBroad304_11614 pLX_304 0% 51.5% 51.4% V5 230C>T;1455_2820delinsG n/a
3 TRCN0000477490 AGCGCACTGATAAGTAGACTCTTC pLX_317 28.6% 51.5% 51.4% V5 230C>T;1455_2820delinsG n/a
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