Transcript: Human NM_006305.4

Homo sapiens acidic nuclear phosphoprotein 32 family member A (ANP32A), mRNA.

Source:
NCBI, updated 2019-09-22
Taxon:
Homo sapiens (human)
Gene:
ANP32A (8125)
Length:
2440
CDS:
145..894

Additional Resources:

NCBI RefSeq record:
NM_006305.4
NBCI Gene record:
ANP32A (8125)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_006305.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000006902 CCTATTGTGATTTGACTGTTT pLKO.1 920 3UTR 100% 4.950 3.465 N ANP32A n/a
2 TRCN0000280011 CCTATTGTGATTTGACTGTTT pLKO_005 920 3UTR 100% 4.950 3.465 N ANP32A n/a
3 TRCN0000077172 GCATCTAAATTTAAGTGGCAA pLKO.1 417 CDS 100% 2.640 1.584 N Anp32a n/a
4 TRCN0000141940 GAAGGCCTCACAGATGAATTT pLKO.1 247 CDS 100% 13.200 6.600 Y ANP32D n/a
5 TRCN0000006904 CCCTCTGATGTGAAAGAACTT pLKO.1 190 CDS 100% 4.950 2.475 Y ANP32A n/a
6 TRCN0000280013 CCCTCTGATGTGAAAGAACTT pLKO_005 190 CDS 100% 4.950 2.475 Y ANP32A n/a
7 TRCN0000145535 CCTCACAGATGAATTTGAAGA pLKO.1 252 CDS 100% 4.950 2.475 Y ANP32D n/a
8 TRCN0000006905 CCTGAAGATGAGGGAGAAGAT pLKO.1 865 CDS 100% 4.950 2.475 Y ANP32A n/a
9 TRCN0000280101 CCTGAAGATGAGGGAGAAGAT pLKO_005 865 CDS 100% 4.950 2.475 Y ANP32A n/a
10 TRCN0000006903 GCCTGGAAGTATTGGCAGAAA pLKO.1 380 CDS 100% 4.950 2.475 Y ANP32A n/a
11 TRCN0000280012 GCCTGGAAGTATTGGCAGAAA pLKO_005 380 CDS 100% 4.950 2.475 Y ANP32A n/a
12 TRCN0000006906 AGAAGCTTGAACTAAGCGATA pLKO.1 344 CDS 100% 4.050 2.025 Y ANP32A n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_006305.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11255 pDONR223 100% 95.5% 95.5% None 715_747del n/a
2 ccsbBroad304_11255 pLX_304 0% 95.5% 95.5% V5 715_747del n/a
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