Transcript: Human XR_001752009.2

PREDICTED: Homo sapiens glyoxylate reductase 1 homolog (GLYR1), transcript variant X6, misc_RNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
GLYR1 (84656)
Length:
4268
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001752009.2
NBCI Gene record:
GLYR1 (84656)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001752009.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000445414 GGAGCTTCATGGCCACTATTG pLKO_005 2280 3UTR 100% 10.800 15.120 N GLYR1 n/a
2 TRCN0000416535 ACCAGACGTCATCCCACAATT pLKO_005 1057 3UTR 100% 13.200 10.560 N GLYR1 n/a
3 TRCN0000064672 CGCAAACTTAGCCTGTCTGAA pLKO.1 1146 3UTR 100% 4.950 3.960 N GLYR1 n/a
4 TRCN0000064669 CGCGGAAAGAAATGCTTCTTT pLKO.1 876 3UTR 100% 0.563 0.450 N GLYR1 n/a
5 TRCN0000423858 GGACCAGTCTGACAACGATAT pLKO_005 2557 3UTR 100% 10.800 7.560 N GLYR1 n/a
6 TRCN0000064671 GCAGCAAATGAGGTGTACAAA pLKO.1 2522 3UTR 100% 5.625 3.938 N GLYR1 n/a
7 TRCN0000064668 CCAGGCAATCACGAAGAAGTT pLKO.1 1463 3UTR 100% 4.950 3.465 N GLYR1 n/a
8 TRCN0000064670 GCCTGATTTCTACCTGAAATA pLKO.1 2431 3UTR 100% 1.320 0.924 N GLYR1 n/a
9 TRCN0000166364 CACACACACACACACACACAA pLKO.1 2873 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001752009.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12837 pDONR223 100% 33.4% None (many diffs) n/a
2 ccsbBroad304_12837 pLX_304 0% 33.4% V5 (many diffs) n/a
3 TRCN0000478521 CACCAGGACAGGTCCAATTAGTTT pLX_317 26.5% 33.4% V5 (many diffs) n/a
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