Transcript: Human XM_005246572.1

PREDICTED: Homo sapiens myosin IB (MYO1B), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
MYO1B (4430)
Length:
4956
CDS:
120..3530

Additional Resources:

NCBI RefSeq record:
XM_005246572.1
NBCI Gene record:
MYO1B (4430)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005246572.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000413182 CTATCATTTGTGACCTAATAG pLKO_005 1447 CDS 100% 13.200 18.480 N MYO1B n/a
2 TRCN0000116147 CCAGGTTAAATCCCTCTACAT pLKO.1 4145 3UTR 100% 4.950 6.930 N MYO1B n/a
3 TRCN0000116148 CCGCCTTAGTAATTCAGTCTT pLKO.1 2377 CDS 100% 4.950 6.930 N MYO1B n/a
4 TRCN0000429487 TCACGACCATTGCTGCATATT pLKO_005 2467 CDS 100% 13.200 9.240 N MYO1B n/a
5 TRCN0000116150 CCATGCAGATTGTGGGCTTTA pLKO.1 889 CDS 100% 10.800 7.560 N MYO1B n/a
6 TRCN0000116149 CCCAAACTATATTAGGTGTAT pLKO.1 1886 CDS 100% 4.950 3.465 N MYO1B n/a
7 TRCN0000116151 CGCCTTAGTAATTCAGTCTTA pLKO.1 2378 CDS 100% 4.950 3.465 N MYO1B n/a
8 TRCN0000100866 CCACTCTCATTCAGAAGATTT pLKO.1 2242 CDS 100% 13.200 7.920 N Myo1b n/a
9 TRCN0000302792 CCACTCTCATTCAGAAGATTT pLKO_005 2242 CDS 100% 13.200 7.920 N Myo1b n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005246572.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.