Transcript: Human XM_005246782.4

PREDICTED: Homo sapiens cyclin dependent kinase 15 (CDK15), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CDK15 (65061)
Length:
3920
CDS:
487..1641

Additional Resources:

NCBI RefSeq record:
XM_005246782.4
NBCI Gene record:
CDK15 (65061)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005246782.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000002098 AGGCTCTTATGCGACAGTTTA pLKO.1 666 CDS 100% 13.200 18.480 N CDK15 n/a
2 TRCN0000196597 GAAGCACTTGTTCATGATTAT pLKO.1 1471 CDS 100% 13.200 9.240 N CDK15 n/a
3 TRCN0000199747 GAGGGCTTCATCCTCATAATG pLKO.1 914 CDS 100% 13.200 9.240 N CDK15 n/a
4 TRCN0000196498 GCTTACTAAGAAGCTTCAAAT pLKO.1 1712 3UTR 100% 13.200 9.240 N CDK15 n/a
5 TRCN0000199688 GTTTCAGGAGTGAGGCTAAAG pLKO.1 1549 CDS 100% 10.800 7.560 N CDK15 n/a
6 TRCN0000002100 AGCAGAATAAATGGACAACTA pLKO.1 697 CDS 100% 4.950 3.465 N CDK15 n/a
7 TRCN0000002099 CAAATCTAACTCCATACTGAA pLKO.1 1728 3UTR 100% 4.950 3.465 N CDK15 n/a
8 TRCN0000002096 CACCAAAGAGACACTGACATT pLKO.1 840 CDS 100% 4.950 3.465 N CDK15 n/a
9 TRCN0000002097 CTACCTAACTACAATCCAGAA pLKO.1 1324 CDS 100% 4.050 2.835 N CDK15 n/a
10 TRCN0000199929 GCCACTGAATATTCCTCTGAG pLKO.1 1153 CDS 100% 4.050 2.835 N CDK15 n/a
11 TRCN0000166364 CACACACACACACACACACAA pLKO.1 2448 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005246782.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12510 pDONR223 100% 90.8% 90.8% None 1048_1152del n/a
2 ccsbBroad304_12510 pLX_304 0% 90.8% 90.8% V5 1048_1152del n/a
3 TRCN0000467466 AAAGGGTTGCCTAGCCCCCAAGGT pLX_317 7.9% 90.8% 90.8% V5 1048_1152del n/a
4 ccsbBroadEn_15139 pDONR223 0% 90.8% 90.8% None 1048_1152del n/a
5 ccsbBroad304_15139 pLX_304 0% 90.8% 90.8% V5 1048_1152del n/a
6 TRCN0000480211 AGCAATTCTAAGCAATCTCCAACG pLX_317 35.3% 90.8% 90.8% V5 1048_1152del n/a
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