Transcript: Human XM_005252812.3

PREDICTED: Homo sapiens inner mitochondrial membrane peptidase subunit 1 (IMMP1L), transcript variant X6, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
IMMP1L (196294)
Length:
923
CDS:
324..824

Additional Resources:

NCBI RefSeq record:
XM_005252812.3
NBCI Gene record:
IMMP1L (196294)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005252812.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000046699 CGACTTGTTGGCTATACTATT pLKO.1 354 CDS 100% 13.200 18.480 N IMMP1L n/a
2 TRCN0000229852 CGACTTGTTGGCTATACTATT pLKO_005 354 CDS 100% 13.200 18.480 N IMMP1L n/a
3 TRCN0000046698 GCTGTATAGCTCATTGTGCTT pLKO.1 382 CDS 100% 2.640 3.696 N IMMP1L n/a
4 TRCN0000046702 CCTATTCCATATGGACTAATA pLKO.1 714 CDS 100% 0.000 0.000 N IMMP1L n/a
5 TRCN0000229855 CCAGGTGCTATGGACCTATTC pLKO_005 700 CDS 100% 10.800 8.640 N IMMP1L n/a
6 TRCN0000046700 GTTTGGTTAGAAGGTGACAAT pLKO.1 660 CDS 100% 4.950 3.960 N IMMP1L n/a
7 TRCN0000229853 ATATGGCTGTATAGCTCATTG pLKO_005 377 CDS 100% 10.800 7.560 N IMMP1L n/a
8 TRCN0000218457 AGGTGACATTGTGATTGCAAA pLKO_005 518 CDS 100% 4.950 3.465 N IMMP1L n/a
9 TRCN0000046701 TGGTATCCAAAGAGGTGACAT pLKO.1 506 CDS 100% 4.950 3.465 N IMMP1L n/a
10 TRCN0000087190 TCAGATATTGTCTTTGCAGAA pLKO.1 465 CDS 100% 4.050 2.835 N Gm8121 n/a
11 TRCN0000229854 CCATCAATGGAGCCTACAATT pLKO_005 438 CDS 100% 13.200 7.920 N IMMP1L n/a
12 TRCN0000087192 CATGTTTGGTTAGAAGGTGAT pLKO.1 657 CDS 100% 4.050 2.835 N Gm8121 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005252812.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05170 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_05170 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000476572 TGGACTGTGAATTGGGTCTTGCCC pLX_317 28.9% 100% 100% V5 n/a
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