Transcript: Human XM_005260581.3

PREDICTED: Homo sapiens cytochrome c oxidase subunit 4I2 (COX4I2), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
COX4I2 (84701)
Length:
596
CDS:
108..491

Additional Resources:

NCBI RefSeq record:
XM_005260581.3
NBCI Gene record:
COX4I2 (84701)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005260581.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000046172 GCCCTTCTGCACAGAACTCAA pLKO.1 260 CDS 100% 4.950 3.465 N COX4I2 n/a
2 TRCN0000046170 CGAGGGATGCACAGCTCAGAA pLKO.1 162 CDS 100% 1.650 1.155 N COX4I2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005260581.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04416 pDONR223 100% 74.2% 74.2% None 247_248ins132 n/a
2 ccsbBroad304_04416 pLX_304 0% 74.2% 74.2% V5 247_248ins132 n/a
3 TRCN0000477531 GCGGAGATACGACCCTACCACACC pLX_317 62.3% 74.2% 74.2% V5 247_248ins132 n/a
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