Transcript: Human XM_005273337.1

PREDICTED: Homo sapiens kynurenine 3-monooxygenase (KMO), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
KMO (8564)
Length:
1978
CDS:
302..1843

Additional Resources:

NCBI RefSeq record:
XM_005273337.1
NBCI Gene record:
KMO (8564)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005273337.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000420557 GATAGCTCACTTCCGGAATAC pLKO_005 1759 CDS 100% 10.800 15.120 N KMO n/a
2 TRCN0000064418 CCACCTAAGAACGGAGATTAT pLKO.1 1019 CDS 100% 13.200 9.240 N KMO n/a
3 TRCN0000415508 GCAGTACCTACCTACTTATAC pLKO_005 1689 CDS 100% 13.200 9.240 N KMO n/a
4 TRCN0000064420 GCTTGGTATTTGATGAGTTAA pLKO.1 1392 CDS 100% 13.200 9.240 N KMO n/a
5 TRCN0000064421 CCACAGGCTGTTGAAATGTAA pLKO.1 820 CDS 100% 5.625 3.938 N KMO n/a
6 TRCN0000064419 CCAGTAATGATGTGGTAGATT pLKO.1 1167 CDS 100% 5.625 3.938 N KMO n/a
7 TRCN0000064422 GAGAGATTTCTTCATGCGATT pLKO.1 1529 CDS 100% 4.050 2.835 N KMO n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005273337.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11278 pDONR223 100% 79.2% 79.1% None 1_120del;1340A>G;1342_1539del n/a
2 TRCN0000466366 ATTATTCCTATCCGAAATTATCGA pLX_317 23.6% 79.2% 79.1% V5 1_120del;1340A>G;1342_1539del n/a
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