Transcript: Mouse XM_006495722.2

PREDICTED: Mus musculus interleukin 1 receptor, type I (Il1r1), transcript variant X11, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Il1r1 (16177)
Length:
4681
CDS:
152..1873

Additional Resources:

NCBI RefSeq record:
XM_006495722.2
NBCI Gene record:
Il1r1 (16177)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006495722.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000012342 CGTGAGCTTCTTCGGAGTAAA pLKO.1 664 CDS 100% 13.200 18.480 N Il1r1 n/a
2 TRCN0000012340 CGACACCATAATTTGGTACAA pLKO.1 307 CDS 100% 4.950 6.930 N Il1r1 n/a
3 TRCN0000344988 CGACACCATAATTTGGTACAA pLKO_005 307 CDS 100% 4.950 6.930 N Il1r1 n/a
4 TRCN0000012341 CCATTGTCTAAACACCGCTTA pLKO.1 1784 CDS 100% 4.050 5.670 N Il1r1 n/a
5 TRCN0000345063 CCATTGTCTAAACACCGCTTA pLKO_005 1784 CDS 100% 4.050 5.670 N Il1r1 n/a
6 TRCN0000012338 CCGTACTTTCTGATGGTGTTT pLKO.1 4315 3UTR 100% 4.950 3.960 N Il1r1 n/a
7 TRCN0000345064 CCGTACTTTCTGATGGTGTTT pLKO_005 4315 3UTR 100% 4.950 3.960 N Il1r1 n/a
8 TRCN0000012339 CCAGATTCTATTCAGTTCATT pLKO.1 1649 CDS 100% 5.625 3.938 N Il1r1 n/a
9 TRCN0000344990 CCAGATTCTATTCAGTTCATT pLKO_005 1649 CDS 100% 5.625 3.938 N Il1r1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006495722.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.