Transcript: Mouse XM_006497172.3

PREDICTED: Mus musculus ribosomal protein S6 kinase polypeptide 1 (Rps6kc1), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Rps6kc1 (320119)
Length:
4329
CDS:
481..3615

Additional Resources:

NCBI RefSeq record:
XM_006497172.3
NBCI Gene record:
Rps6kc1 (320119)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006497172.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000078901 CCGTCCCAGTTATCTCATTTA pLKO.1 2426 CDS 100% 13.200 18.480 N Rps6kc1 n/a
2 TRCN0000302403 CCGTCCCAGTTATCTCATTTA pLKO_005 2426 CDS 100% 13.200 18.480 N Rps6kc1 n/a
3 TRCN0000304694 TTCGACACTCTGAGCTATTTC pLKO_005 659 CDS 100% 13.200 18.480 N Rps6kc1 n/a
4 TRCN0000304749 CTGTTCACAGAACCGACTAAA pLKO_005 2959 CDS 100% 13.200 9.240 N Rps6kc1 n/a
5 TRCN0000078899 GCACAGAGAATTATGGCAAAT pLKO.1 624 CDS 100% 10.800 7.560 N Rps6kc1 n/a
6 TRCN0000302402 GCACAGAGAATTATGGCAAAT pLKO_005 624 CDS 100% 10.800 7.560 N Rps6kc1 n/a
7 TRCN0000078900 GCAACGAGTATGGGCAAGAAA pLKO.1 1988 CDS 100% 5.625 3.375 N Rps6kc1 n/a
8 TRCN0000078902 GCCCTCTTTACCCTTGAAGAT pLKO.1 2317 CDS 100% 4.950 2.970 N Rps6kc1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006497172.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.