Transcript: Mouse XM_006497379.3

PREDICTED: Mus musculus myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 (Mllt10), transcript variant X9, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Mllt10 (17354)
Length:
4582
CDS:
284..3658

Additional Resources:

NCBI RefSeq record:
XM_006497379.3
NBCI Gene record:
Mllt10 (17354)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006497379.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000072134 CGACTGTTATTTCACAGCCTA pLKO.1 1623 CDS 100% 2.640 3.696 N Mllt10 n/a
2 TRCN0000072135 CCCATATGTATGGCAGTAGAT pLKO.1 2271 CDS 100% 0.000 0.000 N Mllt10 n/a
3 TRCN0000072136 CCATGTAACATGTGCTCAGTT pLKO.1 781 CDS 100% 4.950 3.465 N Mllt10 n/a
4 TRCN0000072137 CAGCAGTAAGAGCCCACATAT pLKO.1 2788 CDS 100% 13.200 7.920 N Mllt10 n/a
5 TRCN0000234825 GGTAACCAACTGGCAATTAAT pLKO_005 3068 CDS 100% 15.000 10.500 N MLLT10 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006497379.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01854 pDONR223 100% 9.5% 8% None (many diffs) n/a
2 ccsbBroad304_01854 pLX_304 0% 9.5% 8% V5 (many diffs) n/a
3 TRCN0000465549 CCCTTAACTCAAGAATGGTATGTG pLX_317 76.6% 9.5% 8% V5 (many diffs) n/a
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