Transcript: Mouse XM_006497796.3

PREDICTED: Mus musculus ral guanine nucleotide dissociation stimulator (Ralgds), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ralgds (19730)
Length:
3651
CDS:
119..2845

Additional Resources:

NCBI RefSeq record:
XM_006497796.3
NBCI Gene record:
Ralgds (19730)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006497796.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000055074 CGCCAATGTGTTCTATGCCAT pLKO.1 2689 CDS 100% 2.640 2.112 N Ralgds n/a
2 TRCN0000331481 CGCCAATGTGTTCTATGCCAT pLKO_005 2689 CDS 100% 2.640 2.112 N Ralgds n/a
3 TRCN0000055075 GATGCAGAACTATTCAAGAAA pLKO.1 1292 CDS 100% 5.625 3.938 N Ralgds n/a
4 TRCN0000301175 GATGCAGAACTATTCAAGAAA pLKO_005 1292 CDS 100% 5.625 3.938 N Ralgds n/a
5 TRCN0000055076 CGGAAGAACACTTTGGAACAT pLKO.1 1956 CDS 100% 4.950 3.465 N Ralgds n/a
6 TRCN0000301174 CGGAAGAACACTTTGGAACAT pLKO_005 1956 CDS 100% 4.950 3.465 N Ralgds n/a
7 TRCN0000055077 GCACCTACAGAGCCTTCACTA pLKO.1 552 CDS 100% 4.950 3.465 N Ralgds n/a
8 TRCN0000301255 GCACCTACAGAGCCTTCACTA pLKO_005 552 CDS 100% 4.950 3.465 N Ralgds n/a
9 TRCN0000055073 GCCTGCAACAACTACAGCATT pLKO.1 1931 CDS 100% 4.950 3.465 N Ralgds n/a
10 TRCN0000331713 GCCTGCAACAACTACAGCATT pLKO_005 1931 CDS 100% 4.950 3.465 N Ralgds n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006497796.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.