Transcript: Mouse XM_006501340.3

PREDICTED: Mus musculus ribosomal RNA adenine dimethylase domain containing 1 (Rrnad1), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Rrnad1 (229503)
Length:
2093
CDS:
383..1618

Additional Resources:

NCBI RefSeq record:
XM_006501340.3
NBCI Gene record:
Rrnad1 (229503)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006501340.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000336018 TATGCGGAGAGATTACATAAA pLKO_005 1163 CDS 100% 13.200 18.480 N Rrnad1 n/a
2 TRCN0000336080 GGATACCATAACTTCAGATTT pLKO_005 1649 3UTR 100% 13.200 10.560 N Rrnad1 n/a
3 TRCN0000173738 CCTGAACTCTCTCCCAGAAAT pLKO.1 1529 CDS 100% 13.200 9.240 N Rrnad1 n/a
4 TRCN0000336016 CCTGAACTCTCTCCCAGAAAT pLKO_005 1529 CDS 100% 13.200 9.240 N Rrnad1 n/a
5 TRCN0000175962 GACGCCTACATCATCGAATTT pLKO.1 327 5UTR 100% 13.200 9.240 N Rrnad1 n/a
6 TRCN0000173368 GAGGACTATGCGGAGAGATTA pLKO.1 1157 CDS 100% 13.200 9.240 N Rrnad1 n/a
7 TRCN0000336017 TATGTGAAACAAGGGTTAAAG pLKO_005 1313 CDS 100% 13.200 9.240 N Rrnad1 n/a
8 TRCN0000194173 GAAACATGTCAAGCCCAAGAA pLKO.1 571 CDS 100% 4.950 3.465 N Rrnad1 n/a
9 TRCN0000173462 GCTGCTGCTACATGAAACTCA pLKO.1 1041 CDS 100% 3.000 2.100 N Rrnad1 n/a
10 TRCN0000336078 GCTGCTGCTACATGAAACTCA pLKO_005 1041 CDS 100% 3.000 2.100 N Rrnad1 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006501340.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_08216 pDONR223 100% 74.8% 72% None (many diffs) n/a
2 ccsbBroad304_08216 pLX_304 0% 74.8% 72% V5 (many diffs) n/a
Download CSV