Transcript: Mouse XM_006504891.3

PREDICTED: Mus musculus microtubule associated tumor suppressor candidate 2 (Mtus2), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Mtus2 (77521)
Length:
4652
CDS:
364..2106

Additional Resources:

NCBI RefSeq record:
XM_006504891.3
NBCI Gene record:
Mtus2 (77521)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006504891.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000179628 GAACCAACGAAGAACTACTTT pLKO.1 1967 CDS 100% 5.625 7.875 N Mtus2 n/a
2 TRCN0000196174 GCCAACATCAGGGATGAAGTT pLKO.1 1159 CDS 100% 4.950 3.465 N Mtus2 n/a
3 TRCN0000265093 TAGCTGCACAATGCATCTTAG pLKO_005 2221 3UTR 100% 10.800 6.480 N Mtus2 n/a
4 TRCN0000162548 CACACACACACACACAAATAT pLKO.1 3923 3UTR 100% 15.000 7.500 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006504891.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02744 pDONR223 100% 50.6% 52.2% None (many diffs) n/a
2 ccsbBroad304_02744 pLX_304 0% 50.6% 52.2% V5 (many diffs) n/a
3 TRCN0000474380 TAGAGCGGAGGTTATATGCCAATG pLX_317 45% 50.6% 52.2% V5 (many diffs) n/a
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