Transcript: Mouse XM_006505700.2

PREDICTED: Mus musculus murinoglobulin 2 (Mug2), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Mug2 (17837)
Length:
4689
CDS:
131..4561

Additional Resources:

NCBI RefSeq record:
XM_006505700.2
NBCI Gene record:
Mug2 (17837)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006505700.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000420321 GCATTTAGTAGTGAAGTTTCT pLKO_005 2216 CDS 100% 4.950 6.930 N Mug2 n/a
2 TRCN0000433499 GCTACATCTACCTTGTCAAAG pLKO_005 1470 CDS 100% 10.800 7.560 N Mug2 n/a
3 TRCN0000429144 AGGGAAAGATTCATGTTACTT pLKO_005 1378 CDS 100% 5.625 3.938 N Mug2 n/a
4 TRCN0000080283 CAAGGGCGAAATGCCAACTTT pLKO.1 3545 CDS 100% 5.625 3.938 N Mug2 n/a
5 TRCN0000422104 GTCAACCACAAAGGGAAAGAT pLKO_005 1367 CDS 100% 5.625 3.938 N Mug2 n/a
6 TRCN0000080284 GTGAAGATAAGTATCTGCCAT pLKO.1 920 CDS 100% 2.640 1.848 N Mug2 n/a
7 TRCN0000080285 TCATTGTTCCACAATGACATA pLKO.1 3389 CDS 100% 0.495 0.347 N Mug2 n/a
8 TRCN0000415251 CTGTTGAAGTAGAGATGAATG pLKO_005 3744 CDS 100% 10.800 6.480 N Mug2 n/a
9 TRCN0000080277 GCCAGGACAATCAGTTAAATT pLKO.1 547 CDS 100% 15.000 7.500 Y Mug1 n/a
10 TRCN0000088910 CCAATGTGTTTCCTTCATTAT pLKO.1 382 CDS 100% 13.200 6.600 Y Gm10319 n/a
11 TRCN0000086881 GATTGCAGATTCTGTAAACTT pLKO.1 1759 CDS 100% 5.625 2.813 Y LOC385106 n/a
12 TRCN0000086878 GCAGATTCTGTAAACTTTGAA pLKO.1 1763 CDS 100% 5.625 2.813 Y LOC385106 n/a
13 TRCN0000088912 GCAGTGCTTGTGAAGAACAAA pLKO.1 485 CDS 100% 5.625 2.813 Y Gm10319 n/a
14 TRCN0000087080 AGAATCACAAACAAGCTCATA pLKO.1 1133 CDS 100% 4.950 2.475 Y LOC434613 n/a
15 TRCN0000080287 CCTCCATTTATACCATCTGAA pLKO.1 274 CDS 100% 4.950 2.475 Y Mug2 n/a
16 TRCN0000080286 CCTGCCATTGTGAAAGTCTAT pLKO.1 4466 CDS 100% 4.950 2.475 Y Mug2 n/a
17 TRCN0000086882 CTTGCCTGATGGAGAAGTGAT pLKO.1 1741 CDS 100% 4.950 2.475 Y LOC385106 n/a
18 TRCN0000087078 GCAGATTCACACTTCAGACAT pLKO.1 1163 CDS 100% 4.950 2.475 Y LOC434613 n/a
19 TRCN0000087081 TCCATGTGAATGCAACTGTTA pLKO.1 1059 CDS 100% 4.950 2.475 Y LOC434613 n/a
20 TRCN0000087082 CTCATATTTCTGAAGGCAGAT pLKO.1 1148 CDS 100% 4.050 2.025 Y LOC434613 n/a
21 TRCN0000086879 GATGGAGAAGTGATTGCAGAT pLKO.1 1748 CDS 100% 4.050 2.025 Y LOC385106 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006505700.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.