Transcript: Mouse XM_006505748.4

PREDICTED: Mus musculus LUC7-like 2 (S. cerevisiae) (Luc7l2), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Mus musculus (mouse)
Gene:
Luc7l2 (192196)
Length:
3399
CDS:
580..1776

Additional Resources:

NCBI RefSeq record:
XM_006505748.4
NBCI Gene record:
Luc7l2 (192196)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006505748.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000099566 GCACCTGGGATTTATTGAAAT pLKO.1 1269 CDS 100% 13.200 18.480 N Luc7l2 n/a
2 TRCN0000309132 GCACCTGGGATTTATTGAAAT pLKO_005 1269 CDS 100% 13.200 18.480 N Luc7l2 n/a
3 TRCN0000001191 CGGTCCTATGAGAGTGCTAAT pLKO.1 1702 CDS 100% 10.800 15.120 N LUC7L2 n/a
4 TRCN0000314556 CGGTCCTATGAGAGTGCTAAT pLKO_005 1702 CDS 100% 10.800 15.120 N LUC7L2 n/a
5 TRCN0000305209 GAAGTTTATCGGAACTCTATG pLKO_005 1138 CDS 100% 10.800 15.120 N Luc7l2 n/a
6 TRCN0000099567 CGATCCAAGTCTCGTGAGAAA pLKO.1 1474 CDS 100% 4.950 6.930 N Luc7l2 n/a
7 TRCN0000099568 GATTATGAAATTGCGTCCAAA pLKO.1 835 CDS 100% 4.950 6.930 N Luc7l2 n/a
8 TRCN0000099565 CCCAAATCTCTTGCTGCCTAT pLKO.1 2725 3UTR 100% 4.050 5.670 N Luc7l2 n/a
9 TRCN0000375721 GAAGAATTAAAGAGAGTTGTA pLKO_005 1303 CDS 100% 4.950 3.465 N Luc7l2 n/a
10 TRCN0000099569 AGATTATGAAATTGCGTCCAA pLKO.1 834 CDS 100% 2.640 1.848 N Luc7l2 n/a
11 TRCN0000375720 TCCAGCTTCCAGCAGCAGAAA pLKO_005 1165 CDS 100% 4.950 2.970 N Luc7l2 n/a
12 TRCN0000001192 GCAGAGGAAGTTTATCGGAAT pLKO.1 1132 CDS 100% 4.050 2.835 N LUC7L2 n/a
13 TRCN0000320722 GCAGAGGAAGTTTATCGGAAT pLKO_005 1132 CDS 100% 4.050 2.835 N LUC7L2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006505748.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03349 pDONR223 100% 85.9% 88.9% None (many diffs) n/a
2 ccsbBroad304_03349 pLX_304 0% 85.9% 88.9% V5 (many diffs) n/a
3 TRCN0000472615 TCCGGGGCCGATTCGTTAGCTGAC pLX_317 45.2% 85.9% 88.9% V5 (many diffs) n/a
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