Transcript: Mouse XM_006506072.2

PREDICTED: Mus musculus leucine rich repeat containing 61 (Lrrc61), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Lrrc61 (243371)
Length:
2909
CDS:
432..1211

Additional Resources:

NCBI RefSeq record:
XM_006506072.2
NBCI Gene record:
Lrrc61 (243371)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006506072.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000366131 AGCAACCCGCTCTGTGCAAAT pLKO_005 840 CDS 100% 10.800 15.120 N Lrrc61 n/a
2 TRCN0000366201 ATAGTCCAGTGCTCATATTAT pLKO_005 1646 3UTR 100% 15.000 12.000 N Lrrc61 n/a
3 TRCN0000379091 AGAGGAGATCCCGTCACTATC pLKO_005 1504 3UTR 100% 10.800 8.640 N Lrrc61 n/a
4 TRCN0000121017 CCACCTGCTTACTCTTATGAA pLKO.1 1625 3UTR 100% 5.625 4.500 N Lrrc61 n/a
5 TRCN0000121021 TGGCTTGACCTATCAGGCAAT pLKO.1 600 CDS 100% 4.050 3.240 N Lrrc61 n/a
6 TRCN0000379163 GTGCTCAACGTCTCCAATAAT pLKO_005 666 CDS 100% 15.000 10.500 N Lrrc61 n/a
7 TRCN0000121020 GCAGTGAGCTGTACCAGTTAT pLKO.1 937 CDS 100% 13.200 9.240 N Lrrc61 n/a
8 TRCN0000366129 AGAACCTGCAGAGCCTCAATG pLKO_005 721 CDS 100% 10.800 7.560 N Lrrc61 n/a
9 TRCN0000366130 CAGTGAGCTGTACCAGTTATG pLKO_005 938 CDS 100% 10.800 7.560 N Lrrc61 n/a
10 TRCN0000366203 TCTTCTGAATGCAACTCATAG pLKO_005 1204 CDS 100% 10.800 7.560 N Lrrc61 n/a
11 TRCN0000374621 ACTGCCTGGCCTCAAAGTCAT pLKO_005 890 CDS 100% 4.950 3.465 N Lrrc61 n/a
12 TRCN0000121018 CAGGAGAATTTGCCCTGGATT pLKO.1 505 CDS 100% 4.950 3.465 N Lrrc61 n/a
13 TRCN0000166364 CACACACACACACACACACAA pLKO.1 1783 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006506072.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04007 pDONR223 100% 83.9% 87.6% None (many diffs) n/a
2 ccsbBroad304_04007 pLX_304 0% 83.9% 87.6% V5 (many diffs) n/a
3 TRCN0000465811 ATATCTGGTCCATGAATATCTTTC pLX_317 51.3% 83.9% 87.6% V5 (many diffs) n/a
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