Transcript: Mouse XM_006507924.1

PREDICTED: Mus musculus SET binding factor 2 (Sbf2), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Sbf2 (319934)
Length:
7214
CDS:
116..5827

Additional Resources:

NCBI RefSeq record:
XM_006507924.1
NBCI Gene record:
Sbf2 (319934)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006507924.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000110162 CCGTTGTTTCAATAATGGAAA pLKO.1 1707 CDS 100% 4.950 6.930 N Sbf2 n/a
2 TRCN0000110161 CCCGTTGTTTCAATAATGGAA pLKO.1 1706 CDS 100% 3.000 4.200 N Sbf2 n/a
3 TRCN0000110163 CATCAACAGTTTGACTACATA pLKO.1 1925 CDS 100% 5.625 3.938 N Sbf2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006507924.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000469814 AGCACATGAAACATATGTGAGCCG pLX_317 7.9% 86.2% 90.9% V5 (many diffs) n/a
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