Transcript: Mouse XM_006509503.2

PREDICTED: Mus musculus palladin, cytoskeletal associated protein (Palld), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Palld (72333)
Length:
5128
CDS:
220..4395

Additional Resources:

NCBI RefSeq record:
XM_006509503.2
NBCI Gene record:
Palld (72333)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006509503.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000090755 GCCGGCATCTACACATGTATT pLKO.1 3850 CDS 100% 13.200 18.480 N Palld n/a
2 TRCN0000306642 AGCCAAAGATCTATTGGTTTA pLKO_005 3329 CDS 100% 10.800 15.120 N Palld n/a
3 TRCN0000306575 GGAGTCAACGGGCTGATTAAT pLKO_005 2092 CDS 100% 15.000 10.500 N Palld n/a
4 TRCN0000306641 AGAAGGAGATCTCGCAGATTT pLKO_005 401 CDS 100% 13.200 9.240 N Palld n/a
5 TRCN0000306577 AGCAGGACAGAACTCGTTTAA pLKO_005 3882 CDS 100% 13.200 9.240 N Palld n/a
6 TRCN0000090756 GCTAACCTATGAGGAAAGAAT pLKO.1 3018 CDS 100% 5.625 3.938 N Palld n/a
7 TRCN0000327180 GCTAACCTATGAGGAAAGAAT pLKO_005 3018 CDS 100% 5.625 3.938 N Palld n/a
8 TRCN0000090754 CCCTTGTCATTGCTGAGAGTT pLKO.1 1754 CDS 100% 4.950 3.465 N Palld n/a
9 TRCN0000090757 CCATATTTAGAGAAGCGGCAA pLKO.1 764 CDS 100% 2.160 1.512 N Palld n/a
10 TRCN0000090753 GCAGAGTTTATTTGGAGTGTA pLKO.1 1097 CDS 100% 4.950 2.970 N Palld n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006509503.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02713 pDONR223 100% 67.6% 69.8% None (many diffs) n/a
2 ccsbBroad304_02713 pLX_304 0% 67.6% 69.8% V5 (many diffs) n/a
3 TRCN0000481534 GAATCCATCTCAACTATATTATTT pLX_317 14% 67.6% 69.8% V5 (many diffs) n/a
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