Construct: ORF TRCN0000481534
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015762.1_s317c1
- Derived from:
- ccsbBroadEn_02713
- DNA Barcode:
- GAATCCATCTCAACTATATTATTT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PALLD (23022)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000481534
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23022 | PALLD | palladin, cytoskeletal asso... | NM_016081.4 | 100% | 100% | |
| 2 | human | 23022 | PALLD | palladin, cytoskeletal asso... | NM_001166108.2 | 98.4% | 98.4% | 2198_2248del |
| 3 | human | 23022 | PALLD | palladin, cytoskeletal asso... | XM_011531774.1 | 89.9% | 89.8% | (many diffs) |
| 4 | human | 23022 | PALLD | palladin, cytoskeletal asso... | XM_011531773.1 | 88.7% | 88.6% | (many diffs) |
| 5 | human | 23022 | PALLD | palladin, cytoskeletal asso... | XM_017007910.1 | 79.1% | 79.1% | 1_204del;2169_2840del |
| 6 | human | 23022 | PALLD | palladin, cytoskeletal asso... | XM_005262861.4 | 78.8% | 78.7% | (many diffs) |
| 7 | human | 23022 | PALLD | palladin, cytoskeletal asso... | XM_011531770.2 | 78.1% | 78.1% | 1_204del;2169_2840del;3074_3124del |
| 8 | human | 23022 | PALLD | palladin, cytoskeletal asso... | XM_011531769.2 | 76% | 76% | (many diffs) |
| 9 | human | 23022 | PALLD | palladin, cytoskeletal asso... | XM_011531772.2 | 75.9% | 68.6% | (many diffs) |
| 10 | human | 23022 | PALLD | palladin, cytoskeletal asso... | XM_011531768.2 | 75.1% | 75.1% | (many diffs) |
| 11 | human | 23022 | PALLD | palladin, cytoskeletal asso... | XM_011531771.2 | 70.9% | 70.9% | (many diffs) |
| 12 | human | 23022 | PALLD | palladin, cytoskeletal asso... | NM_001166109.2 | 62.2% | 62.2% | (many diffs) |
| 13 | human | 23022 | PALLD | palladin, cytoskeletal asso... | XM_017007911.1 | 55.8% | 55.7% | (many diffs) |
| 14 | human | 23022 | PALLD | palladin, cytoskeletal asso... | XM_005262866.2 | 51.5% | 51.5% | (many diffs) |
| 15 | human | 23022 | PALLD | palladin, cytoskeletal asso... | XM_011531775.1 | 51.5% | 51.5% | (many diffs) |
| 16 | human | 23022 | PALLD | palladin, cytoskeletal asso... | XM_024453939.1 | 51.5% | 51.5% | (many diffs) |
| 17 | human | 23022 | PALLD | palladin, cytoskeletal asso... | NM_001166110.2 | 48% | 42.6% | (many diffs) |
| 18 | human | 23022 | PALLD | palladin, cytoskeletal asso... | XM_024453940.1 | 47.3% | 42% | (many diffs) |
| 19 | human | 23022 | PALLD | palladin, cytoskeletal asso... | NM_001367567.1 | 36% | 36% | 0_1ins2121 |
| 20 | human | 23022 | PALLD | palladin, cytoskeletal asso... | NM_001367570.1 | 35.5% | 35.5% | 0_1ins2121;77_127del |
| 21 | human | 23022 | PALLD | palladin, cytoskeletal asso... | NM_001367569.1 | 34.2% | 34.1% | (many diffs) |
| 22 | human | 23022 | PALLD | palladin, cytoskeletal asso... | NM_001367568.1 | 33.7% | 33.6% | (many diffs) |
| 23 | mouse | 72333 | Palld | palladin, cytoskeletal asso... | NM_001081390.1 | 84.5% | 87.5% | (many diffs) |
| 24 | mouse | 72333 | Palld | palladin, cytoskeletal asso... | XM_006509503.2 | 67.6% | 69.8% | (many diffs) |
| 25 | mouse | 72333 | Palld | palladin, cytoskeletal asso... | NM_001293772.1 | 66.8% | 68.9% | (many diffs) |
| 26 | mouse | 72333 | Palld | palladin, cytoskeletal asso... | XM_011242242.2 | 66.8% | 68.9% | (many diffs) |
| 27 | mouse | 72333 | Palld | palladin, cytoskeletal asso... | NM_001293773.1 | 45.3% | 48.5% | (many diffs) |
| 28 | mouse | 72333 | Palld | palladin, cytoskeletal asso... | XM_006509504.3 | 44.7% | 47.9% | (many diffs) |
| 29 | mouse | 72333 | Palld | palladin, cytoskeletal asso... | XM_006509505.3 | 44.7% | 47.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 3387
- ORF length:
- 3318
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gtcagggacc tcctcccatg agtccttcta tgactccctc tcagacatgc 121 aggaagaaag caagaatact gacttcttcc cgggcctttc tgctttcctc agccaggaag 181 agataaacaa gagtcttgac ctggcccgga gagccatagc cgactccgaa acagaagatt 241 ttgactcgga aaaggagatc tcgcagattt tcagtacttc tcctgcaagc ctctgtgaac 301 atccttccca taaggagacc aaattgggtg aacacgcctc gaggagacct caggataaca 361 ggtcaacacc tgtccagcct ctggcagaga aacaaactaa gagtatctct tcacctgttt 421 caaagaggaa acctgccatg tcacccctgc tcaccaggcc cagctacatc cggagcctcc 481 gaaaggctga aaagcgtggt gcaaaaactc ccagcacaaa cgtaaagccc aaaacgccac 541 atcaaagaaa gggtggcccc cagagccagc tgtgtgacaa ggcagctaat ttaattgagg 601 agctaacatc catatttaaa gccgcaaagc caagaaacag aagcccaaat ggggagtcct 661 cgtcaccaga cagtgggtac ctgtctccta aaaatcagcc gtcagccctg ctgagtgcct 721 cagccagcca gagccctatg gaagaccaag gggagatgga aagagaggtc aagtcccctg 781 gggccaggca ttgctaccag gacaaccagg acttggcagt gccacacaac cgcaagtctc 841 acccacagcc ccacagcgcc ctccacttcc cagctgcacc tcgattcatc caaaagctga 901 ggagccaaga agtagcagaa gggagccgag tttatctgga gtgtagagtc actggaaacc 961 ccactcctcg agtcagatgg ttctgtgaag ggaaagaact gcacaacact cctgatattc 1021 aaatccactg tgagggaggg gacctccata ccctgatcat agcagaggcc tttgaggacg 1081 acacaggtcg ctacacctgt ttggctacga atcccagcgg ctcagacaca acatctgctg 1141 aggtgttcat tgaaggtgcc agttcaacag attctgacag tgaaagttta gctttcaaat 1201 caagagctgg agctatgcca caagctcaaa agaaaacaac ttctgtttcc ttgacaatag 1261 gatcatcatc tccaaagaca ggggtgacca cagctgtgat tcaaccactg tctgtccctg 1321 tgcaacaggt tcacagtcca acttcatatc tctgccgacc tgatggaacc actactgcct 1381 actttcctcc tgtttttaca aaggaactgc aaaacacagc cgtggcggaa ggccaggtgg 1441 tggttctgga gtgccgggtc cgtggggcac cccctctgca ggtccagtgg tttcggcaag 1501 ggagtgaaat ccaagactct ccagatttcc gaattctaca gaaaaaacct agatctacag 1561 ctgaacctga ggagatttgc accctagtta tcgctgagac tttccctgaa gatgcaggga 1621 tctttacatg ttcagcaaga aatgattatg gatcagcaac cagcactgcc cagctggttg 1681 tcacctcagc caacactgaa aactgtagtt acgagtcaat gggagaatcc aacaatgacc 1741 acttccaaca ctttccacct ccccctccaa tcttggagac aagttccttg gagttggctt 1801 caaagaaacc atctgagatc cagcaggtga acaaccctga gttaggcctg agcagggcag 1861 cccttcaaat gcaattcaat gctgctgaga gggaaacgaa cggagtccat cccagccgtg 1921 gagtaaatgg actgattaac ggcaaagcta acagtaataa atctcttcca acaccagctg 1981 tcctgctttc acccactaag gagccaccac ctctgcttgc caaaccaaaa ctaggatttc 2041 caaagaaggc cagtagaact gctagaatag cctccgatga ggaaattcaa ggcacaaagg 2101 atgctgttat tcaagacctg gaacgaaaac ttcgcttcaa ggaggacctc ctgaacaatg 2161 gccagccgag gttaacatac gaagaaagaa tggctcgtcg actgctaggt gctgacagtg 2221 caactgtctt taatattcag gagccagaag aggaaacagc taatcaggaa tacaaagtct 2281 ccagctgtga acagagactc atcagtgaaa tagagtacag gctagaaagg tctcctgtgg 2341 atgaatcagg tgatgaagtt cagtatggag atgtgcctgt ggaaaatgga atggcaccat 2401 tctttgagat gaagctgaaa cattacaaga tctttgaggg aatgccagta actttcacat 2461 gtagagtggc tggaaatcca aagccaaaga tctattggtt taaagatggg aagcagatct 2521 ctccaaagag tgatcactac accattcaaa gagatctcga tgggacctgc tccctccata 2581 ccacagcctc caccctagat gatgatggga attatacaat tatggctgca aaccctcagg 2641 gccgcatcag ttgtactgga cggctaatgg tacaggctgt caaccaaaga ggtcgaagtc 2701 cccggtctcc ctcaggccat cctcatgtca gaaggcctcg ttctagatca agggacagtg 2761 gagacgaaaa tgaaccaatt caggagcgat tcttcagacc tcacttcttg caggctcctg 2821 gagatctgac tgttcaagaa ggaaaactct gcagaatgga ctgcaaagtc agtgggttac 2881 caaccccaga tctaagctgg caactagatg gaaagcccgt acgccctGAC AGTGCTCACA 2941 AGATGCTGGT GCGTGAGAAC GGGGTGCACT CTCTGATCAT AGAGCCAGTC ACGTCACGTG 3001 ATGCCGGCAT CTACACATGT ATAGCTACCA ACCGAGCAGG ACAGAACTCA TTCAGCCTGG 3061 AGCTTGTGGT TGCTGCTAAA GAAGCACACA AACCCCCTGT GTTTATTGAG AAGCTCCAAA 3121 ACACAGGAGT TGCTGATGGG TACCCAGTGC GGCTGGAATG TCGTGTATTG GGAGTGCCAC 3181 CACCTCAGAT ATTTTGGAAG AAAGAAAATG AATCACTCAC TCACAGCACT GACCGAGTGA 3241 GCATGCACCA GGACAACCAC GGCTACATCT GCCTGCTCAT TCAGGGAGCC ACAAAAGAAG 3301 ATGCTGGGTG GTATACTGTG TCAGCCAAGA ATGAAGCAGG GATTGTGTCC TGTACTGCCA 3361 GGCTGGACGT TTACATTTCT CGACATTTGC CAACTTTCTT GTACAAAGTG GTTGATATCG 3421 GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT 3481 AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GAGAATCCAT 3541 CTCAACTATA TTATTTACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga 3601 aagatt