Transcript: Mouse XM_006510036.3

PREDICTED: Mus musculus interleukin enhancer binding factor 3 (Ilf3), transcript variant X20, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ilf3 (16201)
Length:
3124
CDS:
765..2666

Additional Resources:

NCBI RefSeq record:
XM_006510036.3
NBCI Gene record:
Ilf3 (16201)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006510036.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000066794 GCATGGCAAGAACCCTGTTAT pLKO.1 1538 CDS 100% 13.200 18.480 N Ilf3 n/a
2 TRCN0000304447 CTACTGAGCAGGGACCGATTT pLKO_005 1510 CDS 100% 10.800 15.120 N Ilf3 n/a
3 TRCN0000066797 CGGTGGACTACACTGTTCAAA pLKO.1 1024 CDS 100% 5.625 7.875 N Ilf3 n/a
4 TRCN0000014580 GCCAGATGGTTCTGGCATTTA pLKO.1 824 CDS 100% 1.320 1.848 N ILF3 n/a
5 TRCN0000304446 TGTTAGTTACCATTACGTAAA pLKO_005 2882 3UTR 100% 10.800 8.640 N Ilf3 n/a
6 TRCN0000066793 CCCTGTTGTCAGAGAAGAAAT pLKO.1 580 5UTR 100% 13.200 9.240 N Ilf3 n/a
7 TRCN0000304445 GAACTACCAGTACAGATAAAG pLKO_005 2648 CDS 100% 13.200 9.240 N Ilf3 n/a
8 TRCN0000374151 GAATGCCCTGATGAGGTTAAA pLKO_005 1178 CDS 100% 13.200 9.240 N Ilf3 n/a
9 TRCN0000374204 CCAACTTGTCTCGGGAGATTG pLKO_005 2711 3UTR 100% 10.800 7.560 N Ilf3 n/a
10 TRCN0000066796 GCTGTCTCTGACTGGATTGAT pLKO.1 369 5UTR 100% 5.625 3.938 N Ilf3 n/a
11 TRCN0000316045 GCTGTCTCTGACTGGATTGAT pLKO_005 369 5UTR 100% 5.625 3.938 N Ilf3 n/a
12 TRCN0000066795 GCAAAGGCTTATGCTGCACTT pLKO.1 1695 CDS 100% 4.050 2.835 N Ilf3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006510036.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06449 pDONR223 100% 41.4% 44.9% None (many diffs) n/a
2 ccsbBroad304_06449 pLX_304 0% 41.4% 44.9% V5 (many diffs) n/a
3 TRCN0000467740 TATGAGTATTCTCCACCACAGTTG pLX_317 17.9% 41.4% 44.9% V5 (many diffs) n/a
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