Construct: ORF ccsbBroadEn_06449

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003801.1_s300c1, BRDN0000390740
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ILF3 (3609)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3609 ILF3 interleukin enhancer bindin... NM_001137673.2 99.9% 100% 2055G>T
2 human 3609 ILF3 interleukin enhancer bindin... NM_004516.4 99.3% 99.4% 1546_1547insAGAACGTAAAAC;2043G>T
3 human 3609 ILF3 interleukin enhancer bindin... XM_024451490.1 99.3% 99.4% 1546_1547insAGAACGTAAAAC;2043G>T
4 human 3609 ILF3 interleukin enhancer bindin... NM_153464.3 97.4% 97.3% (many diffs)
5 human 3609 ILF3 interleukin enhancer bindin... XM_011527985.2 89.4% 88.6% (many diffs)
6 human 3609 ILF3 interleukin enhancer bindin... XM_006722742.2 81.3% 81% (many diffs)
7 human 3609 ILF3 interleukin enhancer bindin... NM_017620.2 77.4% 77.2% (many diffs)
8 human 3609 ILF3 interleukin enhancer bindin... XM_011527984.2 77.4% 77.2% (many diffs)
9 human 3609 ILF3 interleukin enhancer bindin... XM_017026763.1 77.4% 77.2% (many diffs)
10 human 3609 ILF3 interleukin enhancer bindin... NM_012218.4 77% 76.7% (many diffs)
11 human 3609 ILF3 interleukin enhancer bindin... XM_024451491.1 48% 47.7% (many diffs)
12 human 3609 ILF3 interleukin enhancer bindin... XM_011527987.1 40.3% 40% (many diffs)
13 human 3609 ILF3 interleukin enhancer bindin... XM_017026765.1 40.3% 40% (many diffs)
14 mouse 16201 Ilf3 interleukin enhancer bindin... NM_001042709.2 87.2% 94.9% (many diffs)
15 mouse 16201 Ilf3 interleukin enhancer bindin... XM_017313144.1 86.6% 94.1% (many diffs)
16 mouse 16201 Ilf3 interleukin enhancer bindin... NM_001042708.2 85.6% 93% (many diffs)
17 mouse 16201 Ilf3 interleukin enhancer bindin... XM_017313140.1 77.7% 84% (many diffs)
18 mouse 16201 Ilf3 interleukin enhancer bindin... XM_017313141.1 77.2% 83.4% (many diffs)
19 mouse 16201 Ilf3 interleukin enhancer bindin... XM_017313139.1 76.4% 82.6% (many diffs)
20 mouse 16201 Ilf3 interleukin enhancer bindin... XM_011242405.2 75.9% 82% (many diffs)
21 mouse 16201 Ilf3 interleukin enhancer bindin... NM_001042707.2 67.4% 73% (many diffs)
22 mouse 16201 Ilf3 interleukin enhancer bindin... XM_006510031.2 67.4% 73% (many diffs)
23 mouse 16201 Ilf3 interleukin enhancer bindin... XM_006510029.3 67% 72.5% (many diffs)
24 mouse 16201 Ilf3 interleukin enhancer bindin... XM_006510030.2 67% 72.5% (many diffs)
25 mouse 16201 Ilf3 interleukin enhancer bindin... NM_001277321.1 66.6% 72.1% (many diffs)
26 mouse 16201 Ilf3 interleukin enhancer bindin... NM_001277322.1 66.4% 71.8% (many diffs)
27 mouse 16201 Ilf3 interleukin enhancer bindin... NM_010561.3 66.4% 71.8% (many diffs)
28 mouse 16201 Ilf3 interleukin enhancer bindin... XM_011242403.2 66.1% 71.5% (many diffs)
29 mouse 16201 Ilf3 interleukin enhancer bindin... XM_017313138.1 62.3% 67.8% (many diffs)
30 mouse 16201 Ilf3 interleukin enhancer bindin... XM_011242404.2 61.1% 66.4% (many diffs)
31 mouse 16201 Ilf3 interleukin enhancer bindin... XM_006510034.3 50.1% 54.4% (many diffs)
32 mouse 16201 Ilf3 interleukin enhancer bindin... XM_017313142.1 50.1% 54.4% (many diffs)
33 mouse 16201 Ilf3 interleukin enhancer bindin... XM_017313143.1 50.1% 54.4% (many diffs)
34 mouse 16201 Ilf3 interleukin enhancer bindin... XM_006510036.3 41.4% 44.9% (many diffs)
35 mouse 16201 Ilf3 interleukin enhancer bindin... XM_017313145.1 41.4% 44.9% (many diffs)
36 mouse 16201 Ilf3 interleukin enhancer bindin... XM_006510037.3 34.2% 37.2% (many diffs)
37 mouse 16201 Ilf3 interleukin enhancer bindin... XM_017313146.1 34.2% 37.2% (many diffs)
38 mouse 16201 Ilf3 interleukin enhancer bindin... XM_017313147.1 34.2% 37.2% (many diffs)
39 mouse 16201 Ilf3 interleukin enhancer bindin... XM_017313148.1 34.2% 37.2% (many diffs)
40 mouse 16201 Ilf3 interleukin enhancer bindin... XM_017313149.1 34.2% 37.2% (many diffs)
41 mouse 16201 Ilf3 interleukin enhancer bindin... XM_017313150.1 34.2% 37.2% (many diffs)
42 mouse 16201 Ilf3 interleukin enhancer bindin... XM_017313151.1 34.2% 37.2% (many diffs)
43 mouse 16201 Ilf3 interleukin enhancer bindin... XM_017313152.1 34.2% 37.2% (many diffs)
44 mouse 16201 Ilf3 interleukin enhancer bindin... XR_001778803.1 32.6% (many diffs)
45 mouse 16201 Ilf3 interleukin enhancer bindin... XR_001778802.1 32.3% (many diffs)
46 mouse 16201 Ilf3 interleukin enhancer bindin... XR_001778801.1 29.7% (many diffs)
47 mouse 16201 Ilf3 interleukin enhancer bindin... XR_001778804.1 27.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2184
ORF length:
2118
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCG TCCAATGCGA ATTTTTGTGA ATGATGACCG CCATGTGATG GCAAAGCATT
121CTTCCGTTTA TCCAACACAA GAGGAGCTGG AGGCAGTCCA GAACATGGTG TCCCACACGG
181AGCGGGCGCT CAAAGCTGTG TCCGACTGGA TAGACGAGCA GGAAAAGGGT AGCAGCGAGC
241AGGCAGAGTC CGATAACATG GATGTGCCCC CAGAGGACGA CAGTAAAGAA GGGGCTGGGG
301AACAGAAGAC GGAGCACATG ACCAGAACCC TGCGGGGAGT GATGCGGGTG GGCCTGGTGG
361CAAAGGGCCT CCTACTCAAG GGGGACTTGG ATCTGGAGCT GGTGCTGCTG TGTAAGGAGA
421AGCCCACAAC CGCCCTCCTG GACAAGGTGG CCGACAACCT GGCCATCCAG CTTGCTGCTG
481TAACAGAAGA CAAGTACGAA ATACTGCAAT CTGTCGACGA TGCTGCGATT GTGATAAAAA
541ACACAAAAGA GCCTCCATTG TCCCTGACCA TCCACCTGAC ATCCCCTGTT GTCAGAGAAG
601AAATGGAGAA AGTATTAGCT GGAGAAACGC TATCAGTCAA CGACCCCCCG GACGTTCTGG
661ACAGGCAGAA ATGCCTTGCT GCCTTGGCGT CCCTCCGACA CGCCAAGTGG TTCCAGGCCA
721GAGCCAACGG GCTGAAGTCT TGTGTCATTG TGATCCGGGT CTTGAGGGAC CTGTGCACTC
781GCGTGCCCAC CTGGGGTCCC CTCCGAGGCT GGCCTCTCGA GCTCCTGTGT GAGAAATCCA
841TTGGCACGGC CAACAGACCG ATGGGTGCTG GCGAGGCCCT GCGGAGAGTG CTGGAGTGCC
901TGGCGTCGGG CATCGTGATG CCAGATGGTT CTGGCATTTA TGACCCTTGT GAAAAAGAAG
961CCACTGATGC TATTGGGCAT CTAGACAGAC AGCAACGGGA AGATATCACA CAGAGTGCGC
1021AGCACGCACT GCGGCTCGCT GCCTTCGGCC AGCTCCATAA AGTCCTAGGC ATGGACCCTC
1081TGCCTTCCAA GATGCCCAAG AAACCAAAGA ATGAAAACCC AGTGGACTAC ACCGTTCAGA
1141TCCCACCAAG CACCACCTAT GCCATTACGC CCATGAAACG CCCAATGGAG GAGGACGGGG
1201AGGAGAAGTC GCCCAGCAAA AAGAAGAAGA AGATTCAGAA GAAAGAGGAG AAGGCAGAGC
1261CCCCCCAGGC TATGAATGCC CTGATGCGGT TGAACCAGCT GAAGCCAGGG CTGCAGTACA
1321AGCTGGTGTC CCAGACTGGG CCCGTCCATG CCCCCATCTT TACCATGTCT GTGGAGGTTG
1381ATGGCAATTC ATTCGAGGCC TCTGGGCCCT CCAAAAAGAC GGCCAAGCTG CACGTGGCCG
1441TTAAGGTGTT ACAGGACATG GGCTTGCCGA CGGGTGCTGA AGGCAGGGAC TCGAGCAAGG
1501GGGAGGACTC GGCTGAGGAG ACCGAGGCGA AGCCAGCAGT GGTGGCCCCT GCCCCAGTGG
1561TAGAAGCTGT CTCCACCCCT AGTGCGGCCT TTCCCTCAGA TGCCACTGCC GAGAACGTAA
1621AACAGCAGGG GCCGATCCTG ACAAAGCACG GCAAGAACCC AGTCATGGAG CTGAACGAGA
1681AGAGGCGTGG GCTCAAGTAC GAGCTCATCT CCGAGACCGG GGGCAGCCAC GACAAGCGCT
1741TCGTCATGGA GGTCGAAGTG GATGGACAGA AGTTCCAAGG TGCTGGTTCC AACAAAAAGG
1801TGGCGAAGGC CTACGCTGCT CTTGCTGCCC TAGAAAAGCT TTTCCCTGAC ACCCCTCTCG
1861CCCTTGATGC CAACAAAAAG AAGAGAGCCC CAGTACCCGT CAGAGGGGGA CCGAAATTTG
1921CTGCTAAGCC ACATAACCCT GGCTTCGGCA TGGGAGGCCC CATGCACAAC GAAGTGCCCC
1981CACCCCCCAA CCTTCGAGGG CGGGGAAGAG GCGGGAGCAT CCGGGGACGA GGGCGCGGGC
2041GAGGATTTGG TGGCGCCAAC CATGGAGGCT ACATGAATGC CGGTGCTGGG TATGGAAGCT
2101ATGGGTACGG AGGCAACTCT GCGACAGCAG GCTACAGTGA CTTTTTCACA GACTGCTACG
2161GCTATCATGA TTTTGGGTCT TCCTACCCAA CTTTCTTGTA CAAAGTtggc attataagaa
2221agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)