Transcript: Mouse XM_006512489.2

PREDICTED: Mus musculus protein phosphatase 1, regulatory (inhibitor) subunit 14c (Ppp1r14c), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ppp1r14c (76142)
Length:
2657
CDS:
597..1145

Additional Resources:

NCBI RefSeq record:
XM_006512489.2
NBCI Gene record:
Ppp1r14c (76142)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006512489.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000247404 GCTCTCGTAGACTGCTATAAA pLKO_005 1041 CDS 100% 15.000 9.000 N Ppp1r14c n/a
2 TRCN0000247400 GAAATGCCAGATGTAGAAATT pLKO_005 960 CDS 100% 13.200 7.920 N Ppp1r14c n/a
3 TRCN0000174700 GAAGAAGAAATGCCAGATGTA pLKO.1 954 CDS 100% 4.950 2.970 N Ppp1r14c n/a
4 TRCN0000247403 GAGGAAAGAGCTTCGAAATTA pLKO_005 1014 CDS 100% 15.000 7.500 Y Ppp1r14c n/a
5 TRCN0000247402 GAGTTGGTCAAGGGCTTAATT pLKO_005 1799 3UTR 100% 15.000 7.500 Y Ppp1r14c n/a
6 TRCN0000247401 CAGAAGAAGAGCGTATGATTT pLKO_005 1128 CDS 100% 13.200 6.600 Y Ppp1r14c n/a
7 TRCN0000174806 GACATTGATGATCTTCTTGAT pLKO.1 981 CDS 100% 4.950 2.475 Y Ppp1r14c n/a
8 TRCN0000173534 GCTTCGAAATTACAGGAAGCT pLKO.1 1023 CDS 100% 0.264 0.132 Y Ppp1r14c n/a
9 TRCN0000002658 CGGATAAGAGGCATGAGGAAA pLKO.1 1095 CDS 100% 4.950 3.465 N PPP1R14C n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006512489.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_09083 pDONR223 100% 78.8% 82.5% None (many diffs) n/a
2 ccsbBroad304_09083 pLX_304 0% 78.8% 82.5% V5 (many diffs) n/a
3 TRCN0000474629 AAAGTTACACAATAAAACGGCTCA pLX_317 100% 78.8% 82.5% V5 (many diffs) n/a
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