Transcript: Mouse XM_006512638.3

PREDICTED: Mus musculus HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1 (Hace1), transcript variant X5, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Hace1 (209462)
Length:
3419
CDS:
494..2683

Additional Resources:

NCBI RefSeq record:
XM_006512638.3
NBCI Gene record:
Hace1 (209462)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006512638.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000086758 CGCATGTAAAGTACCATTTAT pLKO.1 3073 3UTR 100% 15.000 12.000 N Hace1 n/a
2 TRCN0000311551 TTTCCCACGTTATACTTATAT pLKO_005 3153 3UTR 100% 15.000 10.500 N Hace1 n/a
3 TRCN0000306540 TGGTTATACAATGGCATAATG pLKO_005 2665 CDS 100% 13.200 9.240 N Hace1 n/a
4 TRCN0000003413 GCTGTGCCATATACTCCAAAT pLKO.1 2537 CDS 100% 10.800 7.560 N HACE1 n/a
5 TRCN0000086759 CCGGAAATTGATGTAAATGAT pLKO.1 2318 CDS 100% 5.625 3.938 N Hace1 n/a
6 TRCN0000332538 CCGGAAATTGATGTAAATGAT pLKO_005 2318 CDS 100% 5.625 3.938 N Hace1 n/a
7 TRCN0000086762 GCTATGGAAGAGGTGCCTTTA pLKO.1 2102 CDS 100% 10.800 6.480 N Hace1 n/a
8 TRCN0000332539 GCTATGGAAGAGGTGCCTTTA pLKO_005 2102 CDS 100% 10.800 6.480 N Hace1 n/a
9 TRCN0000086760 CCTTCCCTCATACAACTGTTT pLKO.1 2261 CDS 100% 4.950 2.970 N Hace1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006512638.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.