Transcript: Mouse XM_006515006.3

PREDICTED: Mus musculus nuclear receptor coactivator 1 (Ncoa1), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ncoa1 (17977)
Length:
6956
CDS:
395..4738

Additional Resources:

NCBI RefSeq record:
XM_006515006.3
NBCI Gene record:
Ncoa1 (17977)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006515006.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000095569 CAGCAGCTACTGACTGAATAA pLKO.1 4718 CDS 100% 13.200 18.480 N Ncoa1 n/a
2 TRCN0000095571 CGCCGAAATAGCCATACATTT pLKO.1 959 CDS 100% 13.200 18.480 N Ncoa1 n/a
3 TRCN0000095570 CCCACCAAACTATGGTACAAA pLKO.1 3919 CDS 100% 5.625 7.875 N Ncoa1 n/a
4 TRCN0000095573 CCGAATAAATCCCTCAGTCAA pLKO.1 1546 CDS 100% 4.950 6.930 N Ncoa1 n/a
5 TRCN0000433008 TATGAATGAAGGACCCAATAA pLKO_005 2026 CDS 100% 13.200 9.240 N Ncoa1 n/a
6 TRCN0000429698 AGTAGATCAGATACAGCTAAT pLKO_005 613 CDS 100% 10.800 7.560 N Ncoa1 n/a
7 TRCN0000095572 CCTATTCAAATATCCCAGTAA pLKO.1 1992 CDS 100% 4.950 3.465 N Ncoa1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006515006.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000473147 TCTATCCCCGTTAGTGATATAACT pLX_317 11.7% 89.5% 92.3% V5 (many diffs) n/a
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