Transcript: Mouse XM_006518458.2

PREDICTED: Mus musculus BCL2-like 2 (Bcl2l2), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Bcl2l2 (12050)
Length:
6201
CDS:
295..876

Additional Resources:

NCBI RefSeq record:
XM_006518458.2
NBCI Gene record:
Bcl2l2 (12050)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006518458.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000321105 GGCGGAGTTCACAGCTCTATA pLKO_005 726 CDS 100% 13.200 18.480 N Bcl2l2 n/a
2 TRCN0000321174 GGCTGACTTTGTAGGCTATAA pLKO_005 336 CDS 100% 13.200 18.480 N Bcl2l2 n/a
3 TRCN0000004690 CCCAGGTTTCCGACGAACTTT pLKO.1 533 CDS 100% 5.625 7.875 N Bcl2l2 n/a
4 TRCN0000033507 CAGAAGGGTTATGTCTGTGGA pLKO.1 364 CDS 100% 2.640 3.696 N BCL2L2 n/a
5 TRCN0000033506 TGGGCGGAGTTCACAGCTCTA pLKO.1 724 CDS 100% 1.350 1.890 N BCL2L2 n/a
6 TRCN0000321176 GACGGTGAGCTTACTTCAAAG pLKO_005 1186 3UTR 100% 10.800 7.560 N Bcl2l2 n/a
7 TRCN0000321104 GCCGTCTTGTGGCATTCTTTG pLKO_005 575 CDS 100% 10.800 7.560 N Bcl2l2 n/a
8 TRCN0000321106 GTGCTGAGAGTGTCAACAAAG pLKO_005 614 CDS 100% 10.800 7.560 N Bcl2l2 n/a
9 TRCN0000004687 CTTGTGGCATTCTTTGTCTTT pLKO.1 580 CDS 100% 4.950 3.465 N Bcl2l2 n/a
10 TRCN0000004686 GCAGGGAGAATGAGTTGGAAA pLKO.1 1027 3UTR 100% 4.950 3.465 N Bcl2l2 n/a
11 TRCN0000004689 CAACAAAGAAATGGAGCCTTT pLKO.1 627 CDS 100% 4.050 2.835 N Bcl2l2 n/a
12 TRCN0000004688 GTGGCTGACTTTGTAGGCTAT pLKO.1 334 CDS 100% 4.050 2.835 N Bcl2l2 n/a
13 TRCN0000166364 CACACACACACACACACACAA pLKO.1 4967 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006518458.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05881 pDONR223 100% 93.6% 98.9% None (many diffs) n/a
2 ccsbBroad304_05881 pLX_304 0% 93.6% 98.9% V5 (many diffs) n/a
3 TRCN0000466971 TTAAGTTAGCCAGTTCCTGTGTAT pLX_317 49.5% 93.6% 98.9% V5 (many diffs) n/a
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