Transcript: Mouse XM_006520160.3

PREDICTED: Mus musculus PDZ domain containing 2 (Pdzd2), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Pdzd2 (68070)
Length:
11411
CDS:
656..9046

Additional Resources:

NCBI RefSeq record:
XM_006520160.3
NBCI Gene record:
Pdzd2 (68070)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006520160.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000089258 CTAGAGTCTGTTGAAGAATAT pLKO.1 2195 CDS 100% 13.200 9.240 N Pdzd2 n/a
2 TRCN0000070093 GCTGAAGAAACAGCCAGATTT pLKO.1 334 5UTR 100% 13.200 9.240 N LOC432929 n/a
3 TRCN0000089262 TGCGCCATGCAGCTTTAAGTA pLKO.1 3021 CDS 100% 5.625 3.938 N Pdzd2 n/a
4 TRCN0000089260 CCTGGAAGTAAATTCTGTGAA pLKO.1 2998 CDS 100% 4.950 3.465 N Pdzd2 n/a
5 TRCN0000089261 GCAATGACAAACGCCGTTTCT pLKO.1 1566 CDS 100% 4.950 3.465 N Pdzd2 n/a
6 TRCN0000089259 GCCATGCCTTTGAGCTAGAAA pLKO.1 1437 CDS 100% 5.625 3.375 N Pdzd2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006520160.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.