Transcript: Mouse XM_006520685.1

PREDICTED: Mus musculus sterol regulatory element binding factor 2 (Srebf2), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Srebf2 (20788)
Length:
5325
CDS:
561..3863

Additional Resources:

NCBI RefSeq record:
XM_006520685.1
NBCI Gene record:
Srebf2 (20788)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006520685.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000245128 ACCGCTCTCGAATCCTCTTAT pLKO_005 1870 CDS 100% 13.200 18.480 N Srebf2 n/a
2 TRCN0000194042 GTGATTGTCTTGAGCGTCTTT pLKO.1 2076 CDS 100% 4.950 6.930 N Srebf2 n/a
3 TRCN0000176022 GCGGACAACACACAATATCAT pLKO.1 1430 CDS 100% 5.625 4.500 N Srebf2 n/a
4 TRCN0000215753 GCCATTGATTACATCAAATAT pLKO.1 1554 CDS 100% 15.000 10.500 N Srebf2 n/a
5 TRCN0000245127 GCCATTGATTACATCAAATAT pLKO_005 1554 CDS 100% 15.000 10.500 N Srebf2 n/a
6 TRCN0000193306 CTTGGCTAGCTACTTCTTAAA pLKO.1 2639 CDS 100% 13.200 9.240 N Srebf2 n/a
7 TRCN0000245126 GGTGCAACCTCAGATCATTAA pLKO_005 1163 CDS 100% 13.200 9.240 N Srebf2 n/a
8 TRCN0000245129 TTAACACTGCTGTGGTAAATC pLKO_005 4068 3UTR 100% 13.200 9.240 N Srebf2 n/a
9 TRCN0000217166 CCAACCTACAAACCTGCTTAT pLKO.1 2221 CDS 100% 10.800 7.560 N Srebf2 n/a
10 TRCN0000175375 CCTGACTAAGCCTTGTTCATT pLKO.1 4446 3UTR 100% 5.625 3.938 N Srebf2 n/a
11 TRCN0000193776 CCTCTGGTTCTCTTTGTTGTT pLKO.1 4214 3UTR 100% 4.950 3.465 N Srebf2 n/a
12 TRCN0000194129 GCAGCCTTTGATATACCAGAA pLKO.1 935 CDS 100% 4.050 2.835 N Srebf2 n/a
13 TRCN0000175926 GATGCTACAGTTTGTCAGCAA pLKO.1 560 5UTR 100% 2.640 1.848 N Srebf2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006520685.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.