Transcript: Mouse XM_006520955.2

PREDICTED: Mus musculus tubulin tyrosine ligase-like family, member 8 (Ttll8), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ttll8 (239591)
Length:
5023
CDS:
664..3450

Additional Resources:

NCBI RefSeq record:
XM_006520955.2
NBCI Gene record:
Ttll8 (239591)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006520955.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000437079 GACGACCTTCAAGCTGTATTC pLKO_005 3389 CDS 100% 10.800 15.120 N Ttll8 n/a
2 TRCN0000193819 CGATGATATCCACGATGTGAT pLKO.1 1437 CDS 100% 4.950 6.930 N Ttll8 n/a
3 TRCN0000173304 GCGGTTATACCAGAGTCCAAT pLKO.1 3188 CDS 100% 4.950 6.930 N Ttll8 n/a
4 TRCN0000438946 TCCGCTGCTACCTTGTCATAA pLKO_005 2472 CDS 100% 13.200 10.560 N Ttll8 n/a
5 TRCN0000438879 TACGGGAAGACAGCATCATTC pLKO_005 1558 CDS 100% 10.800 7.560 N Ttll8 n/a
6 TRCN0000193859 CCTAACCATCTGGTTCTACAA pLKO.1 2337 CDS 100% 4.950 3.465 N Ttll8 n/a
7 TRCN0000175802 GAGGTCAATGACTACCAACAT pLKO.1 3145 CDS 100% 4.950 3.465 N Ttll8 n/a
8 TRCN0000413546 AGACCACAAAGGACAACAAAT pLKO_005 2225 CDS 100% 13.200 7.920 N Ttll8 n/a
9 TRCN0000175739 GCCTTTCTGTCCCATTGTATT pLKO.1 3336 CDS 100% 13.200 7.920 N Ttll8 n/a
10 TRCN0000415595 GTCTTTGTGACTTGGTGTAAA pLKO_005 535 5UTR 100% 13.200 6.600 Y Acsf2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006520955.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.