Transcript: Mouse XM_006521839.3

PREDICTED: Mus musculus ATP-binding cassette, sub-family C (CFTR/MRP), member 1 (Abcc1), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Abcc1 (17250)
Length:
5954
CDS:
84..4643

Additional Resources:

NCBI RefSeq record:
XM_006521839.3
NBCI Gene record:
Abcc1 (17250)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006521839.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000244862 AGTCCAATCCTCGGGAATTAT pLKO_005 476 CDS 100% 15.000 21.000 N Abcc1 n/a
2 TRCN0000244865 CATCGGCTTAACACCATAATG pLKO_005 4503 CDS 100% 13.200 18.480 N Abcc1 n/a
3 TRCN0000111060 CGGGCAAGAATCTGGTATCAA pLKO.1 5448 3UTR 100% 5.625 7.875 N Abcc1 n/a
4 TRCN0000111062 CCTCGGGAATTATGCTTACTT pLKO.1 484 CDS 100% 5.625 4.500 N Abcc1 n/a
5 TRCN0000244866 AGGTCTATGAATAGTTATAAG pLKO_005 5393 3UTR 100% 13.200 9.240 N Abcc1 n/a
6 TRCN0000244863 TGGACTTGGCCACGTACATTA pLKO_005 1390 CDS 100% 13.200 9.240 N Abcc1 n/a
7 TRCN0000244864 CCGTGTAGAGTTCCGGGATTA pLKO_005 3920 CDS 100% 10.800 7.560 N Abcc1 n/a
8 TRCN0000111061 CCCGACTTTACCAAGTGCTTT pLKO.1 162 CDS 100% 4.950 3.465 N Abcc1 n/a
9 TRCN0000111063 CCTTTCAGTCAGTATTCTGAT pLKO.1 4215 CDS 100% 4.950 3.465 N Abcc1 n/a
10 TRCN0000111064 CGGAGAGATTGTCAACCTCAT pLKO.1 1346 CDS 100% 4.050 2.835 N Abcc1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006521839.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.