Transcript: Mouse XM_006522872.2

PREDICTED: Mus musculus PR domain containing 15 (Prdm15), transcript variant X11, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Prdm15 (114604)
Length:
5623
CDS:
1383..3320

Additional Resources:

NCBI RefSeq record:
XM_006522872.2
NBCI Gene record:
Prdm15 (114604)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006522872.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000226356 TATGTCTAGGTTCGCATAAAT pLKO_005 5582 3UTR 100% 15.000 21.000 N Prdm15 n/a
2 TRCN0000226353 ACATGGCAGTGACGTGTATTT pLKO_005 429 5UTR 100% 13.200 18.480 N Prdm15 n/a
3 TRCN0000218754 GCATTTCCTCTGAAGGTATTT pLKO_005 295 5UTR 100% 13.200 9.240 N Prdm15 n/a
4 TRCN0000226354 TGAGCAGCCTCTGGTCATTAT pLKO_005 765 5UTR 100% 13.200 9.240 N Prdm15 n/a
5 TRCN0000226355 TTCAAGGACATCGCGCTAATG pLKO_005 1656 CDS 100% 10.800 7.560 N Prdm15 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006522872.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12439 pDONR223 100% 49.4% 54.1% None (many diffs) n/a
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