Transcript: Mouse XM_006523460.3

PREDICTED: Mus musculus O-acyl-ADP-ribose deacylase 1 (Oard1), transcript variant X5, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Oard1 (106821)
Length:
1126
CDS:
185..643

Additional Resources:

NCBI RefSeq record:
XM_006523460.3
NBCI Gene record:
Oard1 (106821)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006523460.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000250276 GTCGAATCACTTACGTGAAAG pLKO_005 219 CDS 100% 10.800 15.120 N Oard1 n/a
2 TRCN0000217524 GAAGAGAGATGGGCGATATAT pLKO.1 397 CDS 100% 15.000 12.000 N Oard1 n/a
3 TRCN0000250272 TGAAGAGAGATGGGCGATATA pLKO_005 396 CDS 100% 13.200 9.240 N Oard1 n/a
4 TRCN0000414259 CTGAAGAGAGATGGGCGATAT pLKO_005 395 CDS 100% 10.800 7.560 N OARD1 n/a
5 TRCN0000250274 GAAATTGTGGGAAGGGTAAAC pLKO_005 945 3UTR 100% 10.800 7.560 N Oard1 n/a
6 TRCN0000250275 GACTCTCTAGCCCATTGTATC pLKO_005 266 CDS 100% 10.800 7.560 N Oard1 n/a
7 TRCN0000250273 TGTCGAATGGGTGCTGGAATA pLKO_005 296 CDS 100% 10.800 7.560 N Oard1 n/a
8 TRCN0000191203 CAGGAACTGTTAAGTCAACAA pLKO.1 350 CDS 100% 4.950 3.465 N Oard1 n/a
9 TRCN0000200776 GAAGTCCCATTGTTTGAAGAA pLKO.1 493 CDS 100% 4.950 3.465 N Oard1 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006523460.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05258 pDONR223 100% 91.2% 95.3% None (many diffs) n/a
2 ccsbBroad304_05258 pLX_304 0% 91.2% 95.3% V5 (many diffs) n/a
3 TRCN0000467916 GTTTTAGAGTGACGTATAGCATAC pLX_317 95.3% 91.2% 95.3% V5 (many diffs) n/a
4 ccsbBroadEn_09872 pDONR223 100% 90.7% 95.3% None (many diffs) n/a
5 ccsbBroad304_09872 pLX_304 0% 90.7% 95.3% V5 (many diffs) n/a
6 TRCN0000477840 TAGCGAACTCCGCCAAACTGCGCA pLX_317 65.1% 90.7% 95.3% V5 (many diffs) n/a
Download CSV