Transcript: Mouse XM_006523552.1

PREDICTED: Mus musculus cyclin D3 (Ccnd3), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ccnd3 (12445)
Length:
1682
CDS:
83..769

Additional Resources:

NCBI RefSeq record:
XM_006523552.1
NBCI Gene record:
Ccnd3 (12445)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006523552.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000011979 CCTTTGCGATGTATCCTCCAT pLKO.1 471 CDS 100% 2.640 2.112 N Ccnd3 n/a
2 TRCN0000294760 CCTTTGCGATGTATCCTCCAT pLKO_005 471 CDS 100% 2.640 2.112 N Ccnd3 n/a
3 TRCN0000011978 GCCATGATGGTCAGAGAAATA pLKO.1 1014 3UTR 100% 13.200 9.240 N Ccnd3 n/a
4 TRCN0000294817 GCCATGATGGTCAGAGAAATA pLKO_005 1014 3UTR 100% 13.200 9.240 N Ccnd3 n/a
5 TRCN0000054893 CCAACCTTCTCAGTTGCCAAA pLKO.1 1093 3UTR 100% 4.050 2.835 N Ccnd3 n/a
6 TRCN0000287250 CCAACCTTCTCAGTTGCCAAA pLKO_005 1093 3UTR 100% 4.050 2.835 N Ccnd3 n/a
7 TRCN0000054896 CCCACAGATGTCACAGCCATT pLKO.1 740 CDS 100% 4.050 2.835 N Ccnd3 n/a
8 TRCN0000011980 GCACGACTTCCTGGCCTTGAT pLKO.1 361 CDS 100% 1.650 1.155 N Ccnd3 n/a
9 TRCN0000294761 GCACGACTTCCTGGCCTTGAT pLKO_005 361 CDS 100% 1.650 1.155 N Ccnd3 n/a
10 TRCN0000054895 ACTGAAGTGGACTGCCTGCGA pLKO.1 593 CDS 100% 0.220 0.154 N Ccnd3 n/a
11 TRCN0000287251 ACTGAAGTGGACTGCCTGCGA pLKO_005 593 CDS 100% 0.220 0.154 N Ccnd3 n/a
12 TRCN0000011981 GCCGGGATCACAGGCACTGAA pLKO.1 578 CDS 100% 0.000 0.000 N Ccnd3 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006523552.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00237 pDONR223 100% 69.9% 72.2% None (many diffs) n/a
2 ccsbBroad304_00237 pLX_304 62.1% 69.9% 72.2% V5 (many diffs) n/a
3 TRCN0000470181 TACTTTTGGCGGTGATTAGGTCTG pLX_317 44.7% 69.9% 72.2% V5 (many diffs) n/a
Download CSV