Transcript: Mouse XM_006523871.2

PREDICTED: Mus musculus protein tyrosine phosphatase, receptor type, M (Ptprm), transcript variant X10, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ptprm (19274)
Length:
5228
CDS:
39..4448

Additional Resources:

NCBI RefSeq record:
XM_006523871.2
NBCI Gene record:
Ptprm (19274)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006523871.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000338096 AGCCTCATTTAACGTTGTAAA pLKO_005 764 CDS 100% 13.200 18.480 N Ptprm n/a
2 TRCN0000220452 CCACTGCACATCCGTAGTTAT pLKO.1 3923 CDS 100% 13.200 18.480 N Ptprm n/a
3 TRCN0000338031 TCGATGAAGTTAAGGTCTTAG pLKO_005 553 CDS 100% 10.800 15.120 N Ptprm n/a
4 TRCN0000220453 GCTGCCTCTTTGATGAACCAT pLKO.1 115 CDS 100% 3.000 2.400 N Ptprm n/a
5 TRCN0000220454 CCTATGAATTTGAGACACCTT pLKO.1 1807 CDS 100% 2.640 2.112 N Ptprm n/a
6 TRCN0000338094 GCCCTAATGGACAGCTATAAA pLKO_005 3825 CDS 100% 15.000 10.500 N Ptprm n/a
7 TRCN0000338030 CTACGCAGAATTGGTAGTTAA pLKO_005 854 CDS 100% 13.200 9.240 N Ptprm n/a
8 TRCN0000338028 CTGTTAGAGCAGCGTAGATAT pLKO_005 4683 3UTR 100% 13.200 9.240 N Ptprm n/a
9 TRCN0000220456 CCTGGGTTGCTCAATGTCTAT pLKO.1 369 CDS 100% 4.950 3.465 N Ptprm n/a
10 TRCN0000220455 CCCGGAAATAGATTTATCCAA pLKO.1 1619 CDS 100% 3.000 2.100 N Ptprm n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006523871.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11078 pDONR223 100% 83.6% 92.2% None (many diffs) n/a
2 ccsbBroad304_11078 pLX_304 0% 83.6% 92.2% V5 (many diffs) n/a
3 TRCN0000481445 CATTTCGACCGGGCGGCTAGACTT pLX_317 11.2% 83.6% 92.2% V5 (many diffs) n/a
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