Construct: ORF TRCN0000481445
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012616.1_s317c1
- Derived from:
- ccsbBroadEn_11078
- DNA Barcode:
- CATTTCGACCGGGCGGCTAGACTT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PTPRM (5797)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000481445
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 5797 | PTPRM | protein tyrosine phosphatas... | XM_017025905.1 | 97.1% | 97% | (many diffs) |
2 | human | 5797 | PTPRM | protein tyrosine phosphatas... | XM_011525713.2 | 96% | 95.9% | (many diffs) |
3 | human | 5797 | PTPRM | protein tyrosine phosphatas... | XM_017025904.1 | 95.8% | 95.7% | (many diffs) |
4 | human | 5797 | PTPRM | protein tyrosine phosphatas... | NM_002845.3 | 95.5% | 95.4% | (many diffs) |
5 | human | 5797 | PTPRM | protein tyrosine phosphatas... | XM_017025903.1 | 95.2% | 95.1% | (many diffs) |
6 | human | 5797 | PTPRM | protein tyrosine phosphatas... | XM_017025902.1 | 95% | 94.9% | (many diffs) |
7 | human | 5797 | PTPRM | protein tyrosine phosphatas... | XM_017025901.1 | 94.7% | 94.6% | (many diffs) |
8 | human | 5797 | PTPRM | protein tyrosine phosphatas... | NM_001105244.1 | 94.6% | 94.6% | (many diffs) |
9 | human | 5797 | PTPRM | protein tyrosine phosphatas... | XM_017025900.1 | 94.2% | 94.1% | (many diffs) |
10 | human | 5797 | PTPRM | protein tyrosine phosphatas... | XM_017025899.1 | 93.9% | 93.8% | (many diffs) |
11 | human | 5797 | PTPRM | protein tyrosine phosphatas... | XM_017025898.1 | 93.6% | 93.5% | (many diffs) |
12 | human | 5797 | PTPRM | protein tyrosine phosphatas... | XM_011525712.2 | 93.6% | 93.5% | (many diffs) |
13 | human | 5797 | PTPRM | protein tyrosine phosphatas... | XM_017025897.1 | 93.4% | 93.3% | (many diffs) |
14 | human | 5797 | PTPRM | protein tyrosine phosphatas... | XM_017025896.1 | 93.1% | 93% | (many diffs) |
15 | human | 5797 | PTPRM | protein tyrosine phosphatas... | XM_011525710.2 | 93.1% | 93% | (many diffs) |
16 | human | 5797 | PTPRM | protein tyrosine phosphatas... | XM_017025895.1 | 92.6% | 92.5% | (many diffs) |
17 | human | 5797 | PTPRM | protein tyrosine phosphatas... | XM_017025894.1 | 92.3% | 92.2% | (many diffs) |
18 | human | 5797 | PTPRM | protein tyrosine phosphatas... | XM_011525708.2 | 92% | 91.9% | (many diffs) |
19 | human | 5797 | PTPRM | protein tyrosine phosphatas... | XM_011525716.2 | 88.8% | 88.4% | (many diffs) |
20 | human | 5797 | PTPRM | protein tyrosine phosphatas... | XM_017025909.1 | 88.3% | 87.8% | (many diffs) |
21 | human | 5797 | PTPRM | protein tyrosine phosphatas... | XM_011525722.3 | 88% | 87.5% | (many diffs) |
22 | human | 5797 | PTPRM | protein tyrosine phosphatas... | XM_017025908.1 | 87.3% | 86.8% | (many diffs) |
23 | human | 5797 | PTPRM | protein tyrosine phosphatas... | XM_017025907.1 | 86.9% | 86.5% | (many diffs) |
24 | human | 5797 | PTPRM | protein tyrosine phosphatas... | XM_017025906.1 | 86.5% | 86% | (many diffs) |
25 | human | 5797 | PTPRM | protein tyrosine phosphatas... | XM_011525715.2 | 85.4% | 85% | (many diffs) |
26 | human | 5797 | PTPRM | protein tyrosine phosphatas... | XM_011525717.2 | 74.1% | 74% | (many diffs) |
27 | human | 5797 | PTPRM | protein tyrosine phosphatas... | XR_001753258.1 | 54.5% | (many diffs) | |
28 | human | 5797 | PTPRM | protein tyrosine phosphatas... | XM_017025910.1 | 50% | 47.8% | (many diffs) |
29 | human | 5797 | PTPRM | protein tyrosine phosphatas... | XM_017025911.1 | 49.8% | 47.6% | (many diffs) |
30 | human | 5797 | PTPRM | protein tyrosine phosphatas... | XM_017025912.1 | 48% | 47.7% | (many diffs) |
31 | mouse | 19274 | Ptprm | protein tyrosine phosphatas... | NM_008984.2 | 84.6% | 93.3% | (many diffs) |
32 | mouse | 19274 | Ptprm | protein tyrosine phosphatas... | XM_006523872.2 | 83.9% | 92.4% | (many diffs) |
33 | mouse | 19274 | Ptprm | protein tyrosine phosphatas... | XM_006523871.2 | 83.6% | 92.2% | (many diffs) |
34 | mouse | 19274 | Ptprm | protein tyrosine phosphatas... | XM_017317346.1 | 83.2% | 91.7% | (many diffs) |
35 | mouse | 19274 | Ptprm | protein tyrosine phosphatas... | XM_006523870.2 | 82.7% | 91.1% | (many diffs) |
36 | mouse | 19274 | Ptprm | protein tyrosine phosphatas... | XM_017317345.1 | 82.5% | 90.9% | (many diffs) |
37 | mouse | 19274 | Ptprm | protein tyrosine phosphatas... | XM_006523869.2 | 82.5% | 90.9% | (many diffs) |
38 | mouse | 19274 | Ptprm | protein tyrosine phosphatas... | XM_006523868.2 | 82.3% | 90.6% | (many diffs) |
39 | mouse | 19274 | Ptprm | protein tyrosine phosphatas... | XM_006523867.2 | 82.1% | 90.4% | (many diffs) |
40 | mouse | 19274 | Ptprm | protein tyrosine phosphatas... | XM_006523866.3 | 81.8% | 90.1% | (many diffs) |
41 | mouse | 19274 | Ptprm | protein tyrosine phosphatas... | XM_006523865.2 | 81.6% | 89.9% | (many diffs) |
42 | mouse | 19274 | Ptprm | protein tyrosine phosphatas... | XM_006523864.2 | 81.2% | 89.4% | (many diffs) |
43 | mouse | 19274 | Ptprm | protein tyrosine phosphatas... | XM_017317347.1 | 74.3% | 81.5% | (many diffs) |
44 | mouse | 19274 | Ptprm | protein tyrosine phosphatas... | XM_011246324.2 | 73.1% | 80.1% | (many diffs) |
45 | mouse | 19274 | Ptprm | protein tyrosine phosphatas... | XM_006523873.3 | 54% | 59.1% | (many diffs) |
46 | mouse | 19274 | Ptprm | protein tyrosine phosphatas... | XM_017317348.1 | 53.3% | 58.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 4236
- ORF length:
- 4170
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgcc atcaggttct ttcatgctgg tgaatgcctc tgggagacct gaggggcaga 121 gagcccacct gctcttaccc caacttaaag aaaatgacac ccactgcatc gattttcact 181 attttgtgtc cagcaagagt aattctcctc cggggttact caatgtctac gtgaaggtca 241 ataacgggcc actggggaat cctatctgga atatatctgg agacccagca cgtacatgga 301 acagggcaga actggccatt agtactttct ggcctaactt ttatcaggtg atttttgaag 361 tgataacttc tggacatcaa ggctatctcg ctatcgatga ggtgaaggtg ttaggacatc 421 catgtaccag gactcctcac ttcctgcgga ttcagaatgt ggaagttaat gctggccagt 481 ttgctacctt ccagtgcagt gccatcggca ggaccgtggc aggagacagg ctctggttac 541 agggcattga tgtgcgagat gctcctctga aggaaatcaa ggtgaccagc tcccgacgct 601 tcattgcttc atttaatgtt gtgaatacca ccaaacgaga tgctggaaag taccgctgca 661 tgattcgcac tgaaggaggt gttggaatat caaactatgc agagttggta gttaaagaac 721 cacccgttcc tattgcccca cctcagctcg cctctgtagg agccacctac ctgtggatac 781 agctcaacgc caactccatc aatggggatg ggcccattgt ggcccgagag gtggagtact 841 gcacggccag tgggagctgg aatgaccggc agccagtcga ttccacgagc tataaaattg 901 gacaccttga cccagataca gaatatgaga ttagtgtgct cctgaccagg ccaggggagg 961 gtggcactgg ctctcctggt ccggctctca ggacaagaac aaagtgtgct gatcccatgc 1021 gaggcccaag aaaactagaa gtagtggagg tcaaatctcg gcaaatcact atcagctggg 1081 agccatttgg atataatgta actcgttgcc acagttataa tctcactgtc cactactgtt 1141 accaagttgg aggacaagaa caagtgcgag aagaagtaag ctgggataca gaaaactcac 1201 accctcaaca cacgatcact aacctgtcac catacaccaa tgtcagtgtg aaactgatcc 1261 tcatgaaccc agagggccgg aaggaaagcc aagaactcat agtgcagaca gatgaagacc 1321 tcccaggtgc tgttcccact gaatccatac aaggaagtac ctttgaagag aagatatttc 1381 ttcagtggag agaaccaact caaacatatg gtgtaatcac tttatatgag atcacctaca 1441 aagcagtcag ttcctttgac ccagaaatag atttatccaa tcagagtgga agagtttcaa 1501 agctgggaaa tgaaacccat ttcctgtttt ttggactgta tccggggacc acatactcct 1561 ttaccatccg agctagcaca gctaagggtt ttgggcctcc agcaacaaac cagttcacca 1621 ccaaaatatc agcaccctct atgccagctt atgaacttga gacacctttg aatcaaactg 1681 acaataccgt gacagtcatg ctgaaacctg cccacagcag aggagcacct gtcagtgtct 1741 atcaaatagt tgttgaggaa gaacgtcctc gaagaactaa aaagacgaca gaaatcttaa 1801 agtgctaccc agtgccaatt cacttccaga atgcttctct gctgaactca cagtactact 1861 ttgctgcaga atttcctgca gacagcctcc aagctgcgca gccttttaca attggtgata 1921 ataagacata taatggatac tggaacactc cccttctccc ctataaaagc tacagaattt 1981 atttccaagc tgctagtaga gccaatgggg aaaccaaaat agactgtgtc caagtggcca 2041 caaaaggagc tgccactccg aaaccagtcc cagaacccga gaaacagaca gaccatacag 2101 ttaaaattgc tggagtcatc gcgggcatct tgctgttcgt gattatattt cttggagttg 2161 tgttggtaat gaagaaaagg aaactggcca agaagcggaa agagaccatg agcagcaccc 2221 gacaggagat gactgtgatg gtgaactcaa tggacaagag ctatgctgag cagggcacaa 2281 actgcgacga ggctttctca ttcatggaca cgcacaatct gaatgggaga tctgtgtctt 2341 caccatcgtc cttcacaatg aaaacaaata cactgagcac atcggtgcct aattcctatt 2401 acccagatga aacccacaca atggccagcg ataccagcag cctggtgcag tcccatactt 2461 acaagaagcg agagccggcc gacgtgccct atcagactgg gcagctccac cccgccatcc 2521 gggtggcaga cctccttcag cacatcacac agatgaagtg tgcggagggc tacggcttca 2581 aggaggaata cgagagcttc tttgaagggc agtctgcacc atgggactcg gctaagaaag 2641 gtgagaacag aatgaagaac agatacggga atatcattgc atacgatcat tcccgagtga 2701 ggctgcagac aatagaagga gacacaaact cagactatat caatggcaat tatatcgatg 2761 gttatcatcg acccaatcat tacattgcta cccaagggcc aatgcaggaa accatctatg 2821 acttctggag gatggtgtgg cacgaaaaca ctgcaagtat catcatggtg accaatcttg 2881 tggaagtggg aagggtcaaa tgctgcaaat actggccaga tgacacagag atatataaag 2941 acattaaagt taccctaata gaaacagaac tactggcaga atatgtgata agaacatttg 3001 ctgttgaaaa gagaggtgtg catgaaatcc gagagatcag acagtttcac ttcactggct 3061 ggccggatcg tggggtcccc taccatgcca ccggcctgct gggattcgtg cggcaagtca 3121 agtccaagag cccgcccagt gcaggcccac tggtggtgca ctgcagtgct ggtgcaggga 3181 ggactggctg tttcatcgtc attgatatca tgttggacat ggccgaaagg gaaggggtcg 3241 tagacatcta caactgcgtc agggagctgc ggtcacggag ggtgaacatg gtgcaaacag 3301 aggagcagta tgtgtttatc cacgatgcga tcctggaagc ctgtctttgt ggggacacct 3361 ctgtgcctgc ttcccaagtt aggtctctgt attatgacat gaacaaactg gatccacaga 3421 caaactcaag ccagattaaa gaggaattcc ggacgctaaa catggtgaca ccaacgctgc 3481 gagtagagga ctgcagcatc gcactgttgc cccggaacca tgagaaaaac cggtgcatgg 3541 acatcctgcc cccagaccgc tgcctgccct tcctcatcac catcgatggg gagagcagca 3601 actacatcaa tgctgccctc atggacagct ataaacagcc ttcagctttt atagtcaccc 3661 agcatccttt gccaaacaca gtgaaagact tttggagact ggtcctggat tatcactgca 3721 catccgtagt tatgctaaat gatgtggatc ctgcccagtt gtgtccacag tactggCCAG 3781 AAAACGGAGT ACACAGACAC GGCCCCATCC AGGTGGAATT TGTCTCTGCT GACCTGGAAG 3841 AGGACATCAT CAGCAGGATA TTCCGCATTT ACAATGCCGC CAGACCCCAA GATGGATATC 3901 GGATGGTGCA GCAATTCCAG TTCCTGGGCT GGCCGATGTA CAGGGACACA CCAGTGTCTA 3961 AGCGCTCCTT CTTGAAGCTC ATTCGCCAGG TGGACAAGTG GCAAGAGGAA TACAATGGCG 4021 GGGAAGGCCG CACCGTTGTG CACTGCTTGA ACGGGGGAGG CCGCAGTGGG ACGTTCTGCG 4081 CCATCAGCAT CGTATGTGAG ATGCTCCGGC ACCAGAGAAC CGTGGATGTC TTTCACGCTG 4141 TGAAGACACT GAGGAACAAC AAGCCCAACA TGGTCGACCT CCTGGATCAG TACAAGTTCT 4201 GCTACGAGGT GGCCCTGGAA TACTTGAATT CTGGCTGCCC AACTTTCTTG TACAAAGTGG 4261 TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA 4321 CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG 4381 ACATTTCGAC CGGGCGGCTA GACTTACGCG TTAAGTCgac aatcaacctc tggattacaa 4441 aatttgtgaa agatt