Construct: ORF TRCN0000481445

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012616.1_s317c1
Derived from:
ccsbBroadEn_11078
DNA Barcode:
CATTTCGACCGGGCGGCTAGACTT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PTPRM (5797)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000481445
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5797 PTPRM protein tyrosine phosphatas... XM_017025905.1 97.1% 97% (many diffs)
2 human 5797 PTPRM protein tyrosine phosphatas... XM_011525713.2 96% 95.9% (many diffs)
3 human 5797 PTPRM protein tyrosine phosphatas... XM_017025904.1 95.8% 95.7% (many diffs)
4 human 5797 PTPRM protein tyrosine phosphatas... NM_002845.3 95.5% 95.4% (many diffs)
5 human 5797 PTPRM protein tyrosine phosphatas... XM_017025903.1 95.2% 95.1% (many diffs)
6 human 5797 PTPRM protein tyrosine phosphatas... XM_017025902.1 95% 94.9% (many diffs)
7 human 5797 PTPRM protein tyrosine phosphatas... XM_017025901.1 94.7% 94.6% (many diffs)
8 human 5797 PTPRM protein tyrosine phosphatas... NM_001105244.1 94.6% 94.6% (many diffs)
9 human 5797 PTPRM protein tyrosine phosphatas... XM_017025900.1 94.2% 94.1% (many diffs)
10 human 5797 PTPRM protein tyrosine phosphatas... XM_017025899.1 93.9% 93.8% (many diffs)
11 human 5797 PTPRM protein tyrosine phosphatas... XM_017025898.1 93.6% 93.5% (many diffs)
12 human 5797 PTPRM protein tyrosine phosphatas... XM_011525712.2 93.6% 93.5% (many diffs)
13 human 5797 PTPRM protein tyrosine phosphatas... XM_017025897.1 93.4% 93.3% (many diffs)
14 human 5797 PTPRM protein tyrosine phosphatas... XM_017025896.1 93.1% 93% (many diffs)
15 human 5797 PTPRM protein tyrosine phosphatas... XM_011525710.2 93.1% 93% (many diffs)
16 human 5797 PTPRM protein tyrosine phosphatas... XM_017025895.1 92.6% 92.5% (many diffs)
17 human 5797 PTPRM protein tyrosine phosphatas... XM_017025894.1 92.3% 92.2% (many diffs)
18 human 5797 PTPRM protein tyrosine phosphatas... XM_011525708.2 92% 91.9% (many diffs)
19 human 5797 PTPRM protein tyrosine phosphatas... XM_011525716.2 88.8% 88.4% (many diffs)
20 human 5797 PTPRM protein tyrosine phosphatas... XM_017025909.1 88.3% 87.8% (many diffs)
21 human 5797 PTPRM protein tyrosine phosphatas... XM_011525722.3 88% 87.5% (many diffs)
22 human 5797 PTPRM protein tyrosine phosphatas... XM_017025908.1 87.3% 86.8% (many diffs)
23 human 5797 PTPRM protein tyrosine phosphatas... XM_017025907.1 86.9% 86.5% (many diffs)
24 human 5797 PTPRM protein tyrosine phosphatas... XM_017025906.1 86.5% 86% (many diffs)
25 human 5797 PTPRM protein tyrosine phosphatas... XM_011525715.2 85.4% 85% (many diffs)
26 human 5797 PTPRM protein tyrosine phosphatas... XM_011525717.2 74.1% 74% (many diffs)
27 human 5797 PTPRM protein tyrosine phosphatas... XR_001753258.1 54.5% (many diffs)
28 human 5797 PTPRM protein tyrosine phosphatas... XM_017025910.1 50% 47.8% (many diffs)
29 human 5797 PTPRM protein tyrosine phosphatas... XM_017025911.1 49.8% 47.6% (many diffs)
30 human 5797 PTPRM protein tyrosine phosphatas... XM_017025912.1 48% 47.7% (many diffs)
31 mouse 19274 Ptprm protein tyrosine phosphatas... NM_008984.2 84.6% 93.3% (many diffs)
32 mouse 19274 Ptprm protein tyrosine phosphatas... XM_006523872.2 83.9% 92.4% (many diffs)
33 mouse 19274 Ptprm protein tyrosine phosphatas... XM_006523871.2 83.6% 92.2% (many diffs)
34 mouse 19274 Ptprm protein tyrosine phosphatas... XM_017317346.1 83.2% 91.7% (many diffs)
35 mouse 19274 Ptprm protein tyrosine phosphatas... XM_006523870.2 82.7% 91.1% (many diffs)
36 mouse 19274 Ptprm protein tyrosine phosphatas... XM_017317345.1 82.5% 90.9% (many diffs)
37 mouse 19274 Ptprm protein tyrosine phosphatas... XM_006523869.2 82.5% 90.9% (many diffs)
38 mouse 19274 Ptprm protein tyrosine phosphatas... XM_006523868.2 82.3% 90.6% (many diffs)
39 mouse 19274 Ptprm protein tyrosine phosphatas... XM_006523867.2 82.1% 90.4% (many diffs)
40 mouse 19274 Ptprm protein tyrosine phosphatas... XM_006523866.3 81.8% 90.1% (many diffs)
41 mouse 19274 Ptprm protein tyrosine phosphatas... XM_006523865.2 81.6% 89.9% (many diffs)
42 mouse 19274 Ptprm protein tyrosine phosphatas... XM_006523864.2 81.2% 89.4% (many diffs)
43 mouse 19274 Ptprm protein tyrosine phosphatas... XM_017317347.1 74.3% 81.5% (many diffs)
44 mouse 19274 Ptprm protein tyrosine phosphatas... XM_011246324.2 73.1% 80.1% (many diffs)
45 mouse 19274 Ptprm protein tyrosine phosphatas... XM_006523873.3 54% 59.1% (many diffs)
46 mouse 19274 Ptprm protein tyrosine phosphatas... XM_017317348.1 53.3% 58.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
4236
ORF length:
4170
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgcc atcaggttct ttcatgctgg tgaatgcctc tgggagacct gaggggcaga
121gagcccacct gctcttaccc caacttaaag aaaatgacac ccactgcatc gattttcact
181attttgtgtc cagcaagagt aattctcctc cggggttact caatgtctac gtgaaggtca
241ataacgggcc actggggaat cctatctgga atatatctgg agacccagca cgtacatgga
301acagggcaga actggccatt agtactttct ggcctaactt ttatcaggtg atttttgaag
361tgataacttc tggacatcaa ggctatctcg ctatcgatga ggtgaaggtg ttaggacatc
421catgtaccag gactcctcac ttcctgcgga ttcagaatgt ggaagttaat gctggccagt
481ttgctacctt ccagtgcagt gccatcggca ggaccgtggc aggagacagg ctctggttac
541agggcattga tgtgcgagat gctcctctga aggaaatcaa ggtgaccagc tcccgacgct
601tcattgcttc atttaatgtt gtgaatacca ccaaacgaga tgctggaaag taccgctgca
661tgattcgcac tgaaggaggt gttggaatat caaactatgc agagttggta gttaaagaac
721cacccgttcc tattgcccca cctcagctcg cctctgtagg agccacctac ctgtggatac
781agctcaacgc caactccatc aatggggatg ggcccattgt ggcccgagag gtggagtact
841gcacggccag tgggagctgg aatgaccggc agccagtcga ttccacgagc tataaaattg
901gacaccttga cccagataca gaatatgaga ttagtgtgct cctgaccagg ccaggggagg
961gtggcactgg ctctcctggt ccggctctca ggacaagaac aaagtgtgct gatcccatgc
1021gaggcccaag aaaactagaa gtagtggagg tcaaatctcg gcaaatcact atcagctggg
1081agccatttgg atataatgta actcgttgcc acagttataa tctcactgtc cactactgtt
1141accaagttgg aggacaagaa caagtgcgag aagaagtaag ctgggataca gaaaactcac
1201accctcaaca cacgatcact aacctgtcac catacaccaa tgtcagtgtg aaactgatcc
1261tcatgaaccc agagggccgg aaggaaagcc aagaactcat agtgcagaca gatgaagacc
1321tcccaggtgc tgttcccact gaatccatac aaggaagtac ctttgaagag aagatatttc
1381ttcagtggag agaaccaact caaacatatg gtgtaatcac tttatatgag atcacctaca
1441aagcagtcag ttcctttgac ccagaaatag atttatccaa tcagagtgga agagtttcaa
1501agctgggaaa tgaaacccat ttcctgtttt ttggactgta tccggggacc acatactcct
1561ttaccatccg agctagcaca gctaagggtt ttgggcctcc agcaacaaac cagttcacca
1621ccaaaatatc agcaccctct atgccagctt atgaacttga gacacctttg aatcaaactg
1681acaataccgt gacagtcatg ctgaaacctg cccacagcag aggagcacct gtcagtgtct
1741atcaaatagt tgttgaggaa gaacgtcctc gaagaactaa aaagacgaca gaaatcttaa
1801agtgctaccc agtgccaatt cacttccaga atgcttctct gctgaactca cagtactact
1861ttgctgcaga atttcctgca gacagcctcc aagctgcgca gccttttaca attggtgata
1921ataagacata taatggatac tggaacactc cccttctccc ctataaaagc tacagaattt
1981atttccaagc tgctagtaga gccaatgggg aaaccaaaat agactgtgtc caagtggcca
2041caaaaggagc tgccactccg aaaccagtcc cagaacccga gaaacagaca gaccatacag
2101ttaaaattgc tggagtcatc gcgggcatct tgctgttcgt gattatattt cttggagttg
2161tgttggtaat gaagaaaagg aaactggcca agaagcggaa agagaccatg agcagcaccc
2221gacaggagat gactgtgatg gtgaactcaa tggacaagag ctatgctgag cagggcacaa
2281actgcgacga ggctttctca ttcatggaca cgcacaatct gaatgggaga tctgtgtctt
2341caccatcgtc cttcacaatg aaaacaaata cactgagcac atcggtgcct aattcctatt
2401acccagatga aacccacaca atggccagcg ataccagcag cctggtgcag tcccatactt
2461acaagaagcg agagccggcc gacgtgccct atcagactgg gcagctccac cccgccatcc
2521gggtggcaga cctccttcag cacatcacac agatgaagtg tgcggagggc tacggcttca
2581aggaggaata cgagagcttc tttgaagggc agtctgcacc atgggactcg gctaagaaag
2641gtgagaacag aatgaagaac agatacggga atatcattgc atacgatcat tcccgagtga
2701ggctgcagac aatagaagga gacacaaact cagactatat caatggcaat tatatcgatg
2761gttatcatcg acccaatcat tacattgcta cccaagggcc aatgcaggaa accatctatg
2821acttctggag gatggtgtgg cacgaaaaca ctgcaagtat catcatggtg accaatcttg
2881tggaagtggg aagggtcaaa tgctgcaaat actggccaga tgacacagag atatataaag
2941acattaaagt taccctaata gaaacagaac tactggcaga atatgtgata agaacatttg
3001ctgttgaaaa gagaggtgtg catgaaatcc gagagatcag acagtttcac ttcactggct
3061ggccggatcg tggggtcccc taccatgcca ccggcctgct gggattcgtg cggcaagtca
3121agtccaagag cccgcccagt gcaggcccac tggtggtgca ctgcagtgct ggtgcaggga
3181ggactggctg tttcatcgtc attgatatca tgttggacat ggccgaaagg gaaggggtcg
3241tagacatcta caactgcgtc agggagctgc ggtcacggag ggtgaacatg gtgcaaacag
3301aggagcagta tgtgtttatc cacgatgcga tcctggaagc ctgtctttgt ggggacacct
3361ctgtgcctgc ttcccaagtt aggtctctgt attatgacat gaacaaactg gatccacaga
3421caaactcaag ccagattaaa gaggaattcc ggacgctaaa catggtgaca ccaacgctgc
3481gagtagagga ctgcagcatc gcactgttgc cccggaacca tgagaaaaac cggtgcatgg
3541acatcctgcc cccagaccgc tgcctgccct tcctcatcac catcgatggg gagagcagca
3601actacatcaa tgctgccctc atggacagct ataaacagcc ttcagctttt atagtcaccc
3661agcatccttt gccaaacaca gtgaaagact tttggagact ggtcctggat tatcactgca
3721catccgtagt tatgctaaat gatgtggatc ctgcccagtt gtgtccacag tactggCCAG
3781AAAACGGAGT ACACAGACAC GGCCCCATCC AGGTGGAATT TGTCTCTGCT GACCTGGAAG
3841AGGACATCAT CAGCAGGATA TTCCGCATTT ACAATGCCGC CAGACCCCAA GATGGATATC
3901GGATGGTGCA GCAATTCCAG TTCCTGGGCT GGCCGATGTA CAGGGACACA CCAGTGTCTA
3961AGCGCTCCTT CTTGAAGCTC ATTCGCCAGG TGGACAAGTG GCAAGAGGAA TACAATGGCG
4021GGGAAGGCCG CACCGTTGTG CACTGCTTGA ACGGGGGAGG CCGCAGTGGG ACGTTCTGCG
4081CCATCAGCAT CGTATGTGAG ATGCTCCGGC ACCAGAGAAC CGTGGATGTC TTTCACGCTG
4141TGAAGACACT GAGGAACAAC AAGCCCAACA TGGTCGACCT CCTGGATCAG TACAAGTTCT
4201GCTACGAGGT GGCCCTGGAA TACTTGAATT CTGGCTGCCC AACTTTCTTG TACAAAGTGG
4261TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA
4321CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG
4381ACATTTCGAC CGGGCGGCTA GACTTACGCG TTAAGTCgac aatcaacctc tggattacaa
4441aatttgtgaa agatt

Download FASTA (ORF) (Full)