Transcript: Mouse XM_006524734.3

PREDICTED: Mus musculus calcium channel, voltage-dependent, T type, alpha 1H subunit (Cacna1h), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Cacna1h (58226)
Length:
8241
CDS:
326..7423

Additional Resources:

NCBI RefSeq record:
XM_006524734.3
NBCI Gene record:
Cacna1h (58226)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006524734.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000234117 CTAGAATGCAGCGAGGATAAT pLKO_005 5678 CDS 100% 13.200 18.480 N Cacna1h n/a
2 TRCN0000234119 GGGCTATAGTGCCTCTAATAC pLKO_005 7257 CDS 100% 13.200 18.480 N Cacna1h n/a
3 TRCN0000069369 CCTCTAATACTAGAAACTGAA pLKO.1 7268 CDS 100% 4.950 6.930 N Cacna1h n/a
4 TRCN0000234118 ACGCCACCTTCACCAACTTTG pLKO_005 5721 CDS 100% 10.800 8.640 N Cacna1h n/a
5 TRCN0000218435 AGTACTGCAACTACGTCTTTA pLKO_005 5307 CDS 100% 13.200 9.240 N Cacna1h n/a
6 TRCN0000069372 GCTAGAATGCAGCGAGGATAA pLKO.1 5677 CDS 100% 10.800 7.560 N Cacna1h n/a
7 TRCN0000234120 TGTAGCCGCCACAACCCATAT pLKO_005 7845 3UTR 100% 10.800 7.560 N Cacna1h n/a
8 TRCN0000069370 CCACTCGTTCTACAACTTCAT pLKO.1 1495 CDS 100% 4.950 3.465 N Cacna1h n/a
9 TRCN0000069371 CCTCGTCAATACTCTGAGCAT pLKO.1 2725 CDS 100% 2.640 1.848 N Cacna1h n/a
10 TRCN0000069368 GTGGTGATTCAGGTTTGGGTT pLKO.1 7627 3UTR 100% 2.640 1.848 N Cacna1h n/a
11 TRCN0000044240 GCCTTTGATGACTTCATCTTT pLKO.1 737 CDS 100% 5.625 3.375 N CACNA1G n/a
12 TRCN0000044238 GCCATCAACTTTGACAACATT pLKO.1 1397 CDS 100% 5.625 2.813 Y CACNA1G n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006524734.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.