Transcript: Mouse XM_006527223.2

PREDICTED: Mus musculus ADP-ribosylation factor-like 3 (Arl3), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Arl3 (56350)
Length:
990
CDS:
140..682

Additional Resources:

NCBI RefSeq record:
XM_006527223.2
NBCI Gene record:
Arl3 (56350)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006527223.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000100926 GCCGACAGAAAGAGATTTGAA pLKO.1 422 CDS 100% 5.625 7.875 N Arl3 n/a
2 TRCN0000324980 GCCGACAGAAAGAGATTTGAA pLKO_005 422 CDS 100% 5.625 7.875 N Arl3 n/a
3 TRCN0000100929 GCAACTCGCATCTGAAGACAT pLKO.1 244 CDS 100% 4.950 6.930 N Arl3 n/a
4 TRCN0000324990 GCAACTCGCATCTGAAGACAT pLKO_005 244 CDS 100% 4.950 6.930 N Arl3 n/a
5 TRCN0000100927 CTGCAAGAATGTCAACGCAAA pLKO.1 726 3UTR 100% 4.050 3.240 N Arl3 n/a
6 TRCN0000380337 CACACCTACACAGGGATTTAA pLKO_005 274 CDS 100% 15.000 10.500 N Arl3 n/a
7 TRCN0000379714 ATACTGATATTCTCATCTATG pLKO_005 390 CDS 100% 10.800 7.560 N Arl3 n/a
8 TRCN0000379504 TGAACTGGGTCTGCAAGAATG pLKO_005 716 3UTR 100% 10.800 7.560 N Arl3 n/a
9 TRCN0000100928 CGGAATTACTGGAGGAAGAAA pLKO.1 462 CDS 100% 5.625 3.938 N Arl3 n/a
10 TRCN0000324981 CGGAATTACTGGAGGAAGAAA pLKO_005 462 CDS 100% 5.625 3.938 N Arl3 n/a
11 TRCN0000100925 GTTGCTGCTTTCTGACCAAAT pLKO.1 819 3UTR 100% 10.800 6.480 N Arl3 n/a
12 TRCN0000325053 GTTGCTGCTTTCTGACCAAAT pLKO_005 819 3UTR 100% 10.800 6.480 N Arl3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006527223.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.