Transcript: Mouse XM_006529381.2

PREDICTED: Mus musculus tumor necrosis factor receptor superfamily, member 11a, NFKB activator (Tnfrsf11a), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Tnfrsf11a (21934)
Length:
2810
CDS:
127..1878

Additional Resources:

NCBI RefSeq record:
XM_006529381.2
NBCI Gene record:
Tnfrsf11a (21934)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006529381.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000065702 GATAAATGCTTGCTGCATAAA pLKO.1 258 CDS 100% 13.200 9.240 N Tnfrsf11a n/a
2 TRCN0000065698 GCAGTAGTCTAAGTGGAAATA pLKO.1 764 CDS 100% 13.200 9.240 N Tnfrsf11a n/a
3 TRCN0000362741 GTGACATCATCGTGGTGTATG pLKO_005 1595 CDS 100% 10.800 7.560 N Tnfrsf11a n/a
4 TRCN0000362673 TGCCATCATCTTCGGCGTTTA pLKO_005 684 CDS 100% 10.800 7.560 N Tnfrsf11a n/a
5 TRCN0000065700 CCAGCAGGGAAGCAAATCTAT pLKO.1 1080 CDS 100% 5.625 3.938 N Tnfrsf11a n/a
6 TRCN0000065699 CGACAGTTTAAGCCAGTGTTT pLKO.1 1137 CDS 100% 4.950 3.465 N Tnfrsf11a n/a
7 TRCN0000065701 GTCCCTGAAATGTGGACCATT pLKO.1 1368 CDS 100% 4.950 3.465 N Tnfrsf11a n/a
8 TRCN0000362740 TGCACCCAGGAGAGGCATTAT pLKO_005 108 5UTR 100% 13.200 7.920 N Tnfrsf11a n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006529381.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.