Transcript: Mouse XM_006529510.1

PREDICTED: Mus musculus RIKEN cDNA 2310035C23 gene (2310035C23Rik), transcript variant X11, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
2310035C23Rik (227446)
Length:
4094
CDS:
104..2596

Additional Resources:

NCBI RefSeq record:
XM_006529510.1
NBCI Gene record:
2310035C23Rik (227446)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006529510.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000198593 CGGTTCCGAGATGAGTTTGTT pLKO.1 2183 CDS 100% 5.625 7.875 N 2310035C23Rik n/a
2 TRCN0000181995 CCTGGGTATCATTATGGGCTA pLKO.1 934 CDS 100% 2.160 3.024 N 2310035C23Rik n/a
3 TRCN0000216282 CAAGATGTGTCTACTATTATT pLKO.1 1328 CDS 100% 15.000 10.500 N 2310035C23Rik n/a
4 TRCN0000215934 CTCCAGAACATGAGGTTATTT pLKO.1 2391 CDS 100% 15.000 10.500 N 2310035C23Rik n/a
5 TRCN0000415452 ACAGAGGTCATCCGAACATTT pLKO_005 2135 CDS 100% 13.200 9.240 N 2310035C23Rik n/a
6 TRCN0000263294 AGCTATTACAATGGTACTTAA pLKO_005 2959 3UTR 100% 13.200 9.240 N RELCH n/a
7 TRCN0000435486 AGCTATTACAATGGTACTTAA pLKO_005 2959 3UTR 100% 13.200 9.240 N 2310035C23Rik n/a
8 TRCN0000425624 GAGTTTGTTATACCACATTTA pLKO_005 2195 CDS 100% 13.200 9.240 N 2310035C23Rik n/a
9 TRCN0000215436 GATCCTACAGTCAATAGATAA pLKO.1 3205 3UTR 100% 13.200 9.240 N 2310035C23Rik n/a
10 TRCN0000216566 GCTATTACAATGGTACTTAAA pLKO.1 2960 3UTR 100% 13.200 9.240 N 2310035C23Rik n/a
11 TRCN0000176848 GCTGATTCCTTTATTCCTAAA pLKO.1 275 CDS 100% 10.800 7.560 N 2310035C23Rik n/a
12 TRCN0000176511 CTGTGGTAATAGAAACTTGAT pLKO.1 2780 3UTR 100% 4.950 3.465 N 2310035C23Rik n/a
13 TRCN0000166882 CCAAAGATATTTGCACTGCTT pLKO.1 2720 3UTR 100% 2.640 1.848 N RELCH n/a
14 TRCN0000166849 CAAAGATATTTGCACTGCTTT pLKO.1 2721 3UTR 100% 4.950 2.970 N RELCH n/a
15 TRCN0000177101 CTTGGAAACTTACAGTCTCAT pLKO.1 1085 CDS 100% 4.950 2.970 N 2310035C23Rik n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006529510.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.