Transcript: Mouse XM_006530497.3

PREDICTED: Mus musculus mediator complex subunit 13-like (Med13l), transcript variant X3, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Med13l (76199)
Length:
9047
CDS:
1182..7430

Additional Resources:

NCBI RefSeq record:
XM_006530497.3
NBCI Gene record:
Med13l (76199)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006530497.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000111895 CATGCTCTAACCGGGAAGGGA pLKO.1 7421 CDS 100% 0.250 0.350 N Med13l n/a
2 TRCN0000111896 GCCACCGTGATGTTGCTTATA pLKO.1 5017 CDS 100% 13.200 10.560 N Med13l n/a
3 TRCN0000233505 CATCACCTAGCACCTTATTTA pLKO_005 5298 CDS 100% 15.000 10.500 N MED13L n/a
4 TRCN0000111897 CCCAGTCCAATCCAGCTTTAT pLKO.1 6138 CDS 100% 13.200 9.240 N Med13l n/a
5 TRCN0000111898 CCCAACAATGATGACATGTTT pLKO.1 6855 CDS 100% 5.625 3.938 N Med13l n/a
6 TRCN0000016672 CCTCAGCTCCTCCTGCAGCCA pLKO.1 7457 3UTR 100% 0.000 0.000 N LOC285563 n/a
7 TRCN0000166364 CACACACACACACACACACAA pLKO.1 659 5UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006530497.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.