Transcript: Mouse XM_006533867.2

PREDICTED: Mus musculus Rho GTPase activating protein 23 (Arhgap23), transcript variant X6, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Arhgap23 (58996)
Length:
5822
CDS:
130..4545

Additional Resources:

NCBI RefSeq record:
XM_006533867.2
NBCI Gene record:
Arhgap23 (58996)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006533867.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000217665 GATGCAACCTTCAGTGATATC pLKO.1 2125 CDS 100% 10.800 15.120 N Arhgap23 n/a
2 TRCN0000184726 CAACTTCAACGAGTGGAAGGA pLKO.1 4329 CDS 100% 2.640 3.696 N Arhgap23 n/a
3 TRCN0000184061 CACAGCGACAATAAGGACTCT pLKO.1 4393 CDS 100% 2.640 3.696 N Arhgap23 n/a
4 TRCN0000339752 CATTGGATATCGGAGCTATAG pLKO_005 1332 CDS 100% 10.800 8.640 N Arhgap23 n/a
5 TRCN0000184524 GCAGAAATTCCCGTCTCGTTT pLKO.1 4568 3UTR 100% 4.950 3.960 N Arhgap23 n/a
6 TRCN0000339828 GCAGAAATTCCCGTCTCGTTT pLKO_005 4568 3UTR 100% 4.950 3.960 N Arhgap23 n/a
7 TRCN0000179417 CCCTCCCTTTCACTGTAAATA pLKO.1 5568 3UTR 100% 15.000 10.500 N Arhgap23 n/a
8 TRCN0000339831 ACACTACTATGAAACACTTAA pLKO_005 3156 CDS 100% 13.200 9.240 N Arhgap23 n/a
9 TRCN0000339829 CTGATCAGCAAGAAGCTTAAT pLKO_005 2539 CDS 100% 13.200 9.240 N Arhgap23 n/a
10 TRCN0000217347 GCTGGCTTCTATTCCCTTTAT pLKO.1 1704 CDS 100% 13.200 9.240 N Arhgap23 n/a
11 TRCN0000339830 AGTACCTCCTGCCCAACATTG pLKO_005 3440 CDS 100% 10.800 7.560 N Arhgap23 n/a
12 TRCN0000183413 CCAAGTTTCATACAGAAGGAA pLKO.1 4832 3UTR 100% 3.000 2.100 N Arhgap23 n/a
13 TRCN0000048468 CCTCAACTTCAACGAGTGGAA pLKO.1 4326 CDS 100% 2.640 1.848 N ARHGAP23 n/a
14 TRCN0000195757 CCTCAACTTCAACGAGTGGAA pLKO.1 4326 CDS 100% 2.640 1.848 N Arhgap23 n/a
15 TRCN0000048472 CGCCACTTCATCGTGTACCCA pLKO.1 250 CDS 100% 0.250 0.175 N ARHGAP23 n/a
16 TRCN0000184154 CTTCAGCTCACACCATCTCAT pLKO.1 3978 CDS 100% 4.950 2.970 N Arhgap23 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006533867.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.