Transcript: Mouse XM_006534953.2

PREDICTED: Mus musculus COP9 signalosome subunit 4 (Cops4), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Cops4 (26891)
Length:
1763
CDS:
331..1398

Additional Resources:

NCBI RefSeq record:
XM_006534953.2
NBCI Gene record:
Cops4 (26891)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006534953.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000306591 AGATCCAGCCTCGGGTCATTT pLKO_005 449 CDS 100% 13.200 18.480 N Cops4 n/a
2 TRCN0000087565 CGCGTGTCCTTGATTACAGAA pLKO.1 752 CDS 100% 4.950 6.930 N Cops4 n/a
3 TRCN0000348719 AGCTGTTATTGAGCATAATTT pLKO_005 1083 CDS 100% 15.000 10.500 N Cops4 n/a
4 TRCN0000087566 CCTTGATTACAGAAGGAAATT pLKO.1 759 CDS 100% 13.200 9.240 N Cops4 n/a
5 TRCN0000331389 GATCGATGGAATAGTTCATTT pLKO_005 1239 CDS 100% 13.200 9.240 N Cops4 n/a
6 TRCN0000087567 GCAGATCCAGTCACTTTGTTT pLKO.1 1293 CDS 100% 5.625 3.938 N Cops4 n/a
7 TRCN0000327239 GCAGATCCAGTCACTTTGTTT pLKO_005 1293 CDS 100% 5.625 3.938 N Cops4 n/a
8 TRCN0000087563 CCCTCAAAGCATTTGCATCAT pLKO.1 1455 3UTR 100% 4.950 3.465 N Cops4 n/a
9 TRCN0000363545 CCCTCAAAGCATTTGCATCAT pLKO_005 1455 3UTR 100% 4.950 3.465 N Cops4 n/a
10 TRCN0000118344 GCTTCCATAAGACAGCATCTT pLKO.1 487 CDS 100% 4.950 3.465 N COPS4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006534953.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14137 pDONR223 100% 78.7% 86.4% None (many diffs) n/a
2 ccsbBroad304_14137 pLX_304 0% 78.7% 86.4% V5 (not translated due to frame shift) (many diffs) n/a
3 TRCN0000470966 CTTGTTTCGCCATACTCACATAAT pLX_317 41.3% 78.7% 86.4% V5 (not translated due to frame shift) (many diffs) n/a
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