Transcript: Mouse XM_006538722.3

PREDICTED: Mus musculus transformation related protein 73 (Trp73), transcript variant X4, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Trp73 (22062)
Length:
4600
CDS:
156..1862

Additional Resources:

NCBI RefSeq record:
XM_006538722.3
NBCI Gene record:
Trp73 (22062)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006538722.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000430727 GAACTGCCCTTAGCTACATAT pLKO_005 2019 3UTR 100% 13.200 18.480 N Trp73 n/a
2 TRCN0000012757 AGTGTGGTTGTGCCGTATGAA pLKO.1 645 CDS 100% 5.625 7.875 N Trp73 n/a
3 TRCN0000427345 GCATGTGACCGACATTGTTAA pLKO_005 497 CDS 100% 13.200 10.560 N Trp73 n/a
4 TRCN0000012754 CAGCCTTTGGTTGACTCCTAT pLKO.1 1089 CDS 100% 4.950 3.465 N Trp73 n/a
5 TRCN0000012756 CTGAATGAAAGTACCACCAAA pLKO.1 885 CDS 100% 4.950 3.465 N Trp73 n/a
6 TRCN0000012755 CCCAGTTCAATTTGCTCAGCA pLKO.1 130 5UTR 100% 2.640 1.848 N Trp73 n/a
7 TRCN0000012753 GCGCCTGTCATCCCTTCCAAT pLKO.1 276 CDS 100% 1.650 1.155 N Trp73 n/a
8 TRCN0000006509 GTGTCCAAACTGCATCGAGTA pLKO.1 1451 CDS 100% 4.050 5.670 N TP73 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006538722.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000469889 AACATCTGGGTTTGGCACAAAACC pLX_317 17.4% 76.7% 40.6% V5 (not translated due to prior stop codon) (many diffs) n/a
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