Transcript: Mouse XM_006539044.2

PREDICTED: Mus musculus cilia and flagella associated protein 74 (Cfap74), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Cfap74 (544678)
Length:
5399
CDS:
110..4981

Additional Resources:

NCBI RefSeq record:
XM_006539044.2
NBCI Gene record:
Cfap74 (544678)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006539044.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000269100 CCGCTCTCTAAACCCATAAAC pLKO_005 1244 CDS 100% 13.200 18.480 N Cfap74 n/a
2 TRCN0000268177 CCCGAGAGCACATGATGTTTG pLKO_005 4515 CDS 100% 10.800 15.120 N C030017K20Rik n/a
3 TRCN0000269101 TTCCGTCAAAGTACCCATTAC pLKO_005 2362 CDS 100% 10.800 15.120 N Cfap74 n/a
4 TRCN0000269102 TACTGGCTGAACCAGATATTT pLKO_005 1452 CDS 100% 15.000 10.500 N Cfap74 n/a
5 TRCN0000268131 AGCAGCTGCCAAAGTTCATTA pLKO_005 4275 CDS 100% 13.200 9.240 N C030017K20Rik n/a
6 TRCN0000283623 CATGAGCAGAGGGCAGAAATA pLKO_005 4301 CDS 100% 13.200 9.240 N C030017K20Rik n/a
7 TRCN0000283903 CTACTTACACAATCAACTATT pLKO_005 1725 CDS 100% 13.200 9.240 N Cfap74 n/a
8 TRCN0000268129 CTGGGAAGGCTCAAGAGTTTA pLKO_005 4389 CDS 100% 13.200 9.240 N C030017K20Rik n/a
9 TRCN0000268130 TCCTGGTGACCTTGAACTATG pLKO_005 4635 CDS 100% 10.800 7.560 N C030017K20Rik n/a
10 TRCN0000166364 CACACACACACACACACACAA pLKO.1 5207 3UTR 100% 4.950 2.475 Y KAAG1 n/a
11 TRCN0000178741 CACACACATACACACACACAA pLKO.1 5197 3UTR 100% 4.950 2.475 Y Cstad n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006539044.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.