Transcript: Human XM_006713643.3

PREDICTED: Homo sapiens melanotransferrin (MELTF), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
MELTF (4241)
Length:
4040
CDS:
114..2408

Additional Resources:

NCBI RefSeq record:
XM_006713643.3
NBCI Gene record:
MELTF (4241)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006713643.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000047101 CAAAGCTGTCAGCGACTATTT pLKO.1 596 CDS 100% 13.200 18.480 N MELTF n/a
2 TRCN0000372976 TGTTCGACTCCTCCAACTATC pLKO_005 2170 CDS 100% 10.800 15.120 N MELTF n/a
3 TRCN0000434476 ATCGCCACACAGACCTATGAG pLKO_005 1116 CDS 100% 4.950 6.930 N MELTF n/a
4 TRCN0000047098 CCACAATAAGAACGGGTTCAA pLKO.1 2147 CDS 100% 4.950 6.930 N MELTF n/a
5 TRCN0000428601 GGGCGAAGTGTACGATCAAGA pLKO_005 398 CDS 100% 4.950 6.930 N MELTF n/a
6 TRCN0000421058 AGCTCAGGTCAGAGGACTATG pLKO_005 1888 CDS 100% 10.800 8.640 N MELTF n/a
7 TRCN0000419340 AGACTCTACCTCGGAGCTTGT pLKO_005 1091 CDS 100% 4.050 3.240 N MELTF n/a
8 TRCN0000378839 CAACAGCCAGGAGCGGTATTA pLKO_005 1751 CDS 100% 13.200 9.240 N MELTF n/a
9 TRCN0000372915 CCAACATCTTCACCGTGTATG pLKO_005 2008 CDS 100% 10.800 7.560 N MELTF n/a
10 TRCN0000047100 CAACCGTCTTTGACAACACAA pLKO.1 1837 CDS 100% 4.950 3.465 N MELTF n/a
11 TRCN0000047099 GTGACCATTGACACCCTGAAA pLKO.1 468 CDS 100% 4.950 3.465 N MELTF n/a
12 TRCN0000420629 TGTGAAGCACAGCACGGTACT pLKO_005 791 CDS 100% 4.050 2.835 N MELTF n/a
13 TRCN0000047102 GCAGCACAAGTGCGGCAACAT pLKO.1 209 CDS 100% 1.650 1.155 N MELTF n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006713643.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01004 pDONR223 100% 36.9% 32.4% None (many diffs) n/a
2 ccsbBroad304_01004 pLX_304 0% 36.9% 32.4% V5 (many diffs) n/a
3 TRCN0000469761 GCTGCGCTCAATACTTTACAAGTG pLX_317 39.3% 36.9% 32.4% V5 (many diffs) n/a
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