Transcript: Human XM_006714416.3

PREDICTED: Homo sapiens N-deacetylase and N-sulfotransferase 3 (NDST3), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
NDST3 (9348)
Length:
3237
CDS:
460..3081

Additional Resources:

NCBI RefSeq record:
XM_006714416.3
NBCI Gene record:
NDST3 (9348)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006714416.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000427530 ATCGAAGCCTTCTAGATAAAT pLKO_005 896 CDS 100% 15.000 21.000 N NDST3 n/a
2 TRCN0000035993 CGTTTGATTCTCATAAAGGTT pLKO.1 2858 CDS 100% 3.000 4.200 N NDST3 n/a
3 TRCN0000035992 GCGTGCACAAATCACAAATTT pLKO.1 1467 CDS 100% 15.000 12.000 N NDST3 n/a
4 TRCN0000035990 CCCATTTCAGTTGCTAATTAT pLKO.1 2739 CDS 100% 15.000 10.500 N NDST3 n/a
5 TRCN0000415588 GACCTCCAACACCTACCATAT pLKO_005 619 CDS 100% 10.800 7.560 N NDST3 n/a
6 TRCN0000035989 CCCACAGTCCTAGTATTTGTA pLKO.1 691 CDS 100% 5.625 3.938 N NDST3 n/a
7 TRCN0000035991 GCTTTGTATTTGTTCCTGGTT pLKO.1 2287 CDS 100% 2.640 1.848 N NDST3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006714416.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07396 pDONR223 100% 99.9% 100% None 81C>T n/a
2 ccsbBroad304_07396 pLX_304 0% 99.9% 100% V5 81C>T n/a
3 TRCN0000491282 ACGTAGTCCTAAACAGAATCCTGA pLX_317 10.9% 99.9% 100% V5 81C>T n/a
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