Transcript: Human XM_006714422.4

PREDICTED: Homo sapiens Rap guanine nucleotide exchange factor 2 (RAPGEF2), transcript variant X8, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
RAPGEF2 (9693)
Length:
8258
CDS:
2169..6926

Additional Resources:

NCBI RefSeq record:
XM_006714422.4
NBCI Gene record:
RAPGEF2 (9693)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006714422.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000036987 CCATACAATGATATTGGGATT pLKO.1 3948 CDS 100% 4.050 5.670 N RAPGEF2 n/a
2 TRCN0000336859 CTTGATCTCATTGGGATAATG pLKO_005 7324 3UTR 100% 13.200 10.560 N RAPGEF2 n/a
3 TRCN0000036985 CGCAACATTGAACCTACTGAA pLKO.1 4503 CDS 100% 4.950 3.960 N RAPGEF2 n/a
4 TRCN0000336916 ACAGCTCTCTATGCGAAATTT pLKO_005 4472 CDS 100% 15.000 10.500 N RAPGEF2 n/a
5 TRCN0000336955 CAACTGAGTGGAAGGTATTAT pLKO_005 4341 CDS 100% 15.000 10.500 N RAPGEF2 n/a
6 TRCN0000336917 TAAGGTTACACGGGTAGTATT pLKO_005 3284 CDS 100% 13.200 9.240 N RAPGEF2 n/a
7 TRCN0000336858 TGATTGAACCTGATCAGTATA pLKO_005 6007 CDS 100% 13.200 9.240 N RAPGEF2 n/a
8 TRCN0000036984 CCAGCAAGATTACTGCCGTAT pLKO.1 2984 CDS 100% 4.050 2.835 N RAPGEF2 n/a
9 TRCN0000036986 CGGACCATGATTGAACCTGAT pLKO.1 6000 CDS 100% 4.050 2.835 N RAPGEF2 n/a
10 TRCN0000239101 AGCAAGATTACTGCCGTATTT pLKO_005 2986 CDS 100% 13.200 18.480 N Rapgef2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006714422.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.