Transcript: Human XM_006715864.4

PREDICTED: Homo sapiens zinc finger protein 467 (ZNF467), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZNF467 (168544)
Length:
2563
CDS:
121..2031

Additional Resources:

NCBI RefSeq record:
XM_006715864.4
NBCI Gene record:
ZNF467 (168544)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_006715864.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000107932 CGCAAGAAGACGCACTTGATT pLKO.1 1087 CDS 100% 5.625 4.500 N ZNF467 n/a
2 TRCN0000107930 ACCCTTTCTTGCCCACAGTTT pLKO.1 2049 3UTR 100% 4.950 3.465 N ZNF467 n/a
3 TRCN0000107933 TCGCAAGAAGACGCACTTGAT pLKO.1 1086 CDS 100% 4.950 3.465 N ZNF467 n/a
4 TRCN0000107934 GTGGATGATTCGGAAGGTGAA pLKO.1 513 CDS 100% 4.050 2.835 N ZNF467 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006715864.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05144 pDONR223 100% 93.5% 93.5% None 1_123del n/a
2 ccsbBroad304_05144 pLX_304 0% 93.5% 93.5% V5 1_123del n/a
3 TRCN0000477927 GAGGTTATGTATTCTAGGAGATGG pLX_317 13.7% 93.5% 93.5% V5 1_123del n/a
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