Construct: ORF TRCN0000477927
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009687.1_s317c1
- Derived from:
- ccsbBroadEn_05144
- DNA Barcode:
- GAGGTTATGTATTCTAGGAGATGG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF467 (168544)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000477927
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 168544 | ZNF467 | zinc finger protein 467 | NM_207336.3 | 100% | 100% | |
| 2 | human | 168544 | ZNF467 | zinc finger protein 467 | XM_005249959.5 | 100% | 100% | |
| 3 | human | 168544 | ZNF467 | zinc finger protein 467 | XM_005249960.5 | 100% | 100% | |
| 4 | human | 168544 | ZNF467 | zinc finger protein 467 | XM_005249961.5 | 100% | 100% | |
| 5 | human | 168544 | ZNF467 | zinc finger protein 467 | XM_011515858.1 | 100% | 100% | |
| 6 | human | 168544 | ZNF467 | zinc finger protein 467 | XM_006715864.4 | 93.5% | 93.5% | 1_123del |
| 7 | human | 168544 | ZNF467 | zinc finger protein 467 | XM_017011799.2 | 72.3% | 67.6% | (many diffs) |
| 8 | human | 168544 | ZNF467 | zinc finger protein 467 | XM_011515857.3 | 65.9% | 65.9% | 1_753del;901_902ins111 |
| 9 | human | 168544 | ZNF467 | zinc finger protein 467 | NM_001329856.2 | 22.1% | 16.6% | (many diffs) |
| 10 | mouse | 68910 | Zfp467 | zinc finger protein 467 | XM_006506546.3 | 55% | 56.6% | (many diffs) |
| 11 | mouse | 68910 | Zfp467 | zinc finger protein 467 | XM_006506547.3 | 55% | 56.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1851
- ORF length:
- 1785
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgag agagaccttg gaggccctca gctccctggg attctctgtg ggacagccag 121 agatggcccc ccaaagtgag cccagggaag gatcccataa tgcccaggag cagatgtcct 181 cttctaggga agagagagca ctgggggtgt gctcagggca cgaggcccct acaccggagg 241 aaggtgccca cacagaacaa gccgaggctc cctgcagagg ccaggcgtgc tcagcacaga 301 aggctcagcc tgtgggtacc tgcccaggag aggagtggat gattcggaag gtgaaggtgg 361 aggacgaaga tcaggaggca gaagaggagg tcgaatggcc ccagcatcta tcgttacttc 421 ccagcccctt tcccgcgcct gacctggggc atctggctgc cgcgtacaaa ctggagccag 481 gggccccggg ggcactgagt gggctcgcgc tgtctgggtg gggtccgatg ccggagaagc 541 cctacggctg cggggagtgt gagcggcgct tccgggacca gctgacgttg cgactgcacc 601 agcggctgca ccggggcgag ggcccctgcg cctgcccgga ctgcggccgc agcttcacgc 661 agcgcgccca catgctactg catcagcgca gccaccgcgg cgagcggcct ttcccgtgct 721 ccgagtgcga caagcgcttc agcaagaagg cccatctgac ccgccacctg cgcacgcaca 781 cgggcgagcg gccctacccg tgcgcggagt gcggcaagcg cttcagccag aagatccacc 841 tgggctcgca ccaaaagacc cacaccggcg agcggccctt cccctgcacg gaatgcgaga 901 agcgctttcg caagaagacg cacttgattc ggcaccagcg catccatacg ggcgagaggc 961 cctaccagtg cgcacagtgc gcacgcagct tcacgcacaa gcagcacttg gtgcggcacc 1021 aaagggtgca ccagacggcc ggcccggcca ggccctctcc cgactcgtcc gcttctcctc 1081 attccactgc cccgtccccg accccatcct ttcccgggcc aaagcctttc gcgtgctccg 1141 actgcggctt gagcttcggc tggaaaaaga acctcgccac gcaccagtgt ctgcaccgca 1201 gcgagggtcg cccctttggg tgcgatgagt gcgcactggg cgccaccgtg gatgcccccg 1261 ccgccaagcc cctggccagc gcgcctggcg gaccgggctg cggcccagga tccgatcccg 1321 tggtgcccca gcgcgccccc tcgggcgagc ggtccttctt ctgcccggac tgcgggcgcg 1381 gcttctccca tgggcagcac ctggcgcggc acccgcgcgt gcacacgggc gaacggccct 1441 tcgcctgcac gcagtgtgac cgccgcttcg gctcgcggcc taatctggtc gcccactcca 1501 gggcccacag cggcgccagg cctttcgcct gcgctcagtg cggccgccgc ttcagccgca 1561 agtcgcacct gggccgccac caggcggtgc acactggcag ccgcccccac gccTGCGCCG 1621 TCTGCGCCCG CAGCTTCAGC TCCAAAACCA ACCTAGTCCG CCACCAGGCG ATCCACACAG 1681 GCTCCCGCCC CTTCTCCTGC CCGCAGTGCG GAAAGAGCTT CAGCCGCAAG ACCCACCTGG 1741 TGCGGCACCA GCTCATTCAC GGCGAAGCCG CCCACGCGGC CCCGGACGCC GCCCTTGCGG 1801 CCCCAGCCTG GTCCGCTCCC CCCGAGGTGG CGCCGCCCCC GCTCTTCTTC TGCCCAACTT 1861 TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT 1921 CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT 1981 CTTGTGGAAA GGACGAGAGG TTATGTATTC TAGGAGATGG ACGCGTTAAG TCgacaatca 2041 acctctggat tacaaaattt gtgaaagatt